PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G111400.1
Common NameB456_007G111400, LOC105802828
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27502.8 Da    PI: 4.9051
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G111400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-183084256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++++f++eq++ Le +Fe++  +  +++ + Ak+lgL+ rqV +WFqN+Ra++k
  Gorai.007G111400.1 30 KNKRRFSDEQIKSLELMFESETRLEPRKKLQVAKELGLQPRQVAIWFQNKRARWK 84
                        67889*************************************************9 PP
2HD-ZIP_I/II120.31e-3831122293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         +krr+s+eq+k+LE +Fe+e++Lep++K ++a+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++yd+l+++ e+L++e+++L ++l+
  Gorai.007G111400.1  31 NKRRFSDEQIKSLELMFESETRLEPRKKLQVAKELGLQPRQVAIWFQNKRARWKSKQLERDYTILQANYDHLASKYESLKREKQALLAQLQ 121
                         79***************************************************************************************98 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Gorai.007G111400.1 122 K 122
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-181388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-191586IPR009057Homeodomain-like
PROSITE profilePS5007117.7672686IPR001356Homeobox domain
SMARTSM003894.4E-152890IPR001356Homeobox domain
PfamPF000462.2E-153084IPR001356Homeobox domain
CDDcd000866.53E-143387No hitNo description
PRINTSPR000313.5E-55766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000313.5E-56682IPR000047Helix-turn-helix motif
PfamPF021831.3E-1586126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLDGEEYREE MGEPFSSVVQ VTPTKKKKNK NKRRFSDEQI KSLELMFESE TRLEPRKKLQ  60
VAKELGLQPR QVAIWFQNKR ARWKSKQLER DYTILQANYD HLASKYESLK REKQALLAQL  120
QKLNDLIKKP KEEEQCCGQV NGMRCSEGAS DKGETTVKSD SEGQLSLSMG RSEHALGALS  180
DDDSAIRTDY FGLEEEPNLM SMVDPADGSL SSPEDWRSLD SDGLFDQSPC GYQWWDFWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1240.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488170590.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490157.11e-177PREDICTED: homeobox-leucine zipper protein ATHB-12-like
RefseqXP_016730971.11e-177PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-73ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0D2QQP41e-175A0A0D2QQP4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MVV81e-175A0A1U8MVV8_GOSHI; homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2P5RQP01e-175A0A2P5RQP0_GOSBA; Uncharacterized protein
STRINGGorai.007G111400.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-65homeobox 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]