PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G109500.4 | ||||||||
Common Name | B456_007G109500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 600aa MW: 66656 Da PI: 7.3335 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.6 | 8.5e-22 | 129 | 230 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt sd++++g +++ +k+a+e+ ++ ++ +++l+ +d++g +W++k+i+ ++++r++lt+GW+ Fv +++L +gD +vF Gorai.007G109500.4 129 FSKILTASDTSTHGGFSVLRKHATEClppldmNLATP-TQELVAKDLHGYEWRFKHIFrGRQPRRHLLTTGWSTFVTSKRLVAGDAFVFL- 217 889***************************9744444.459****************97778888*************************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 + +++el+v+v+r Gorai.007G109500.4 218 -RGDNGELRVGVRR 230 .3489999****98 PP | |||||||
2 | Auxin_resp | 106 | 4.3e-35 | 256 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+Pr+ s+F++ v+k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk Gorai.007G109500.4 256 AAHAVTTHTLFVVYYKPRT--SQFIIGVNKYLEAINNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 335 79****************6..9***********************************************99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.05E-38 | 114 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-39 | 120 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.21E-19 | 127 | 230 | No hit | No description |
SMART | SM01019 | 3.8E-21 | 129 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.21 | 129 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-20 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-32 | 256 | 335 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA 60 STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE 120 APKRKVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR 180 FKHIFRGRQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS 240 SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAINN GFSVGMRFKM 300 RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PAAIQRPERV SPWEIEPFVA 360 SASTNAQPTI MCKRPRPVDI PASEITTSSA GSAFWCRESI QSHELTPVGS TLEVQSSENQ 420 VMWPMRQKEA DNCLINGNGG YKSRTPPENA WPPSPLVNVS LNLFPDSMEN NYKTGALQTA 480 LTGYAKGLMH DQVEKRKTET FTGCRLFGFN LTDSTSVAAP PDKEQTSTSI DYNGVRGHVP 540 AAFHVEQKPE TSKEQKQVAS ETSTQEMQAK QGSATSMRSR TKVNFTVSAS LDCIHYSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 1e-168 | 19 | 358 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-168 | 19 | 358 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 372 | 376 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ567000 | 8e-39 | AJ567000.1 Gossypium hirsutum microsatellite DNA mGhCIR051, clone CIR051. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490132.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0D2QQN7 | 0.0 | A0A0D2QQN7_GOSRA; Auxin response factor | ||||
STRING | Gorai.007G109500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G109500.4 |
Publications ? help Back to Top | |||
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