PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G105100.7 | ||||||||
Common Name | B456_007G105100, LOC105802762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 40716.4 Da PI: 7.0914 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 6.9e-23 | 261 | 323 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+ Gorai.007G105100.7 261 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 323 89*******************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.0E-33 | 1 | 92 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.7E-21 | 121 | 241 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-18 | 255 | 320 | No hit | No description |
Pfam | PF00170 | 1.3E-20 | 261 | 323 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.4E-21 | 261 | 325 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.128 | 263 | 326 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.25E-11 | 264 | 317 | No hit | No description |
CDD | cd14702 | 4.45E-22 | 266 | 315 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 268 | 283 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGNNEEGKPS KSDKSSSPVP TNNIHVYPDW AAMQAYYGPH VNMPPYYSSA VASGHAPPPY 60 MWGPTQPMMP SYGAPYAAIY SHGGVYAHPA VPLASHSLGV PSSPAAAGPV ETPTKSPGNT 120 EQGLMKKLKG FDGLAISIGN GTAENAEGRA KPRPSHSLET AGSADGSDGN TTGTDQSRRK 180 RSREGTPTIG EDEKIEAKSN QVAAGEVTAT ISPKLIGTVV SPGMTTGTIL ELRNTPTMNA 240 MSSAMGVHCG VMPTEVWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LARKVESLTS 300 ENAALRSEIN QLTEMSEKVR LENAILVEEL KNAQLGHAQE NILNKKEDKE GEMGEKRSDS 360 GAKLHQLLDP SPRDDAVAAG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 283 | RRSRLRK |
2 | 277 | 284 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490054.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X6 | ||||
Swissprot | P42776 | 1e-125 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A0D2SHR8 | 0.0 | A0A0D2SHR8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G105100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-118 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G105100.7 |
Entrez Gene | 105802762 |
Publications ? help Back to Top | |||
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