PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G105100.6 | ||||||||
Common Name | B456_007G105100, LOC105802762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 383aa MW: 40959.6 Da PI: 6.8724 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 6.9e-23 | 263 | 325 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+ Gorai.007G105100.6 263 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 325 89*******************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 9.3E-35 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.7E-21 | 123 | 243 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-18 | 257 | 322 | No hit | No description |
Pfam | PF00170 | 1.3E-20 | 263 | 325 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.4E-21 | 263 | 327 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.128 | 265 | 328 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.88E-11 | 266 | 319 | No hit | No description |
CDD | cd14702 | 4.87E-22 | 268 | 317 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 270 | 285 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MGNNEEGKPS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP 60 PYMWGPTQPM MPSYGAPYAA IYSHGGVYAH PAVPLASHSL GVPSSPAAAG PVETPTKSPG 120 NTEQGLMKKL KGFDGLAISI GNGTAENAEG RAKPRPSHSL ETAGSADGSD GNTTGTDQSR 180 RKRSREGTPT IGEDEKIEAK SNQVAAGEVT ATISPKLIGT VVSPGMTTGT ILELRNTPTM 240 NAMSSAMGVH CGVMPTEVWL QNERELKRER RKQSNRESAR RSRLRKQAET EELARKVESL 300 TSENAALRSE INQLTEMSEK VRLENAILVE ELKNAQLGHA QENILNKKED KEGEMGEKRS 360 DSGAKLHQLL DPSPRDDAVA AG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 285 | RRSRLRK |
2 | 279 | 286 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490053.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X5 | ||||
Swissprot | P42776 | 1e-127 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A0D2TCS7 | 0.0 | A0A0D2TCS7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G105100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-120 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G105100.6 |
Entrez Gene | 105802762 |
Publications ? help Back to Top | |||
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