PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105100.4
Common NameB456_007G105100, LOC105802762
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 389aa    MW: 41670.5 Da    PI: 6.8724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37.1e-23269331163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Gorai.007G105100.4 269 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 331
                         89*******************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.5E-35194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.7E-21123249No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-18263328No hitNo description
PfamPF001701.4E-20269331IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-21269333IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128271334IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-11272325No hitNo description
CDDcd147023.00E-22274323No hitNo description
PROSITE patternPS000360276291IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGNNEEGKPS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP  60
PYMWGPTQPM MPSYGAPYAA IYSHGGVYAH PAVPLASHSL GVPSSPAAAG PVETPTKSPG  120
NTEQGLMKKL KGFDGLAISI GNGTAENAEG RAKPRPSHSL ETAGSADGSD GNTTGTDQSR  180
RKRSREGTPT IGMTPFFSED EKIEAKSNQV AAGEVTATIS PKLIGTVVSP GMTTGTILEL  240
RNTPTMNAMS SAMGVHCGVM PTEVWLQNER ELKRERRKQS NRESARRSRL RKQAETEELA  300
RKVESLTSEN AALRSEINQL TEMSEKVRLE NAILVEELKN AQLGHAQENI LNKKEDKEGE  360
MGEKRSDSGA KLHQLLDPSP RDDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285291RRSRLRK
2285292RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490049.10.0PREDICTED: G-box-binding factor 3-like isoform X2
SwissprotP427761e-125GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2QQB80.0A0A0D2QQB8_GOSRA; Uncharacterized protein
STRINGGorai.007G105100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-119G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]