PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G105100.3
Common NameB456_007G105100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 368aa    MW: 39175.7 Da    PI: 7.3475
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G105100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.5e-23248310163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Gorai.007G105100.3 248 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 310
                         89*******************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-192279IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.2E-21108228No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-18242307No hitNo description
SMARTSM003388.4E-21248312IPR004827Basic-leucine zipper domain
PfamPF001701.3E-20248310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128250313IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-11251304No hitNo description
CDDcd147026.27E-22253302No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGNNEEGKPS KSDKSSSPVP TAYYGPHVNM PPYYSSAVAS GHAPPPYMWG PTQPMMPSYG  60
APYAAIYSHG GVYAHPAVPL ASHSLGVPSS PAAAGPVETP TKSPGNTEQG LMKKLKGFDG  120
LAISIGNGTA ENAEGRAKPR PSHSLETAGS ADGSDGNTTG TDQSRRKRSR EGTPTIGEDE  180
KIEAKSNQVA AGEVTATISP KLIGTVVSPG MTTGTILELR NTPTMNAMSS AMGVHCGVMP  240
TEVWLQNERE LKRERRKQSN RESARRSRLR KQAETEELAR KVESLTSENA ALRSEINQLT  300
EMSEKVRLEN AILVEELKNA QLGHAQENIL NKKEDKEGEM GEKRSDSGAK LHQLLDPSPR  360
DDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270RRSRLRK
2264271RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490056.10.0PREDICTED: G-box-binding factor 3-like isoform X8
SwissprotP427761e-111GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2SHR50.0A0A0D2SHR5_GOSRA; Uncharacterized protein
STRINGGorai.007G105100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-108G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]