PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G105100.1 | ||||||||
Common Name | B456_007G105100, LOC105802762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 390aa MW: 41741.6 Da PI: 6.8724 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.3 | 7.1e-23 | 270 | 332 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+ Gorai.007G105100.1 270 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 332 89*******************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 9.6E-35 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-20 | 123 | 250 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-18 | 264 | 329 | No hit | No description |
SMART | SM00338 | 8.4E-21 | 270 | 334 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-20 | 270 | 332 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.128 | 272 | 335 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.94E-11 | 273 | 326 | No hit | No description |
CDD | cd14702 | 2.30E-22 | 275 | 324 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 277 | 292 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MGNNEEGKPS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP 60 PYMWGPTQPM MPSYGAPYAA IYSHGGVYAH PAVPLASHSL GVPSSPAAAG PVETPTKSPG 120 NTEQGLMKKL KGFDGLAISI GNGTAENAEG RAKPRPSHSL ETAGSADGSD GNTTGTDQSR 180 RKRSREGTPT IGMTPFFTGE DEKIEAKSNQ VAAGEVTATI SPKLIGTVVS PGMTTGTILE 240 LRNTPTMNAM SSAMGVHCGV MPTEVWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL 300 ARKVESLTSE NAALRSEINQ LTEMSEKVRL ENAILVEELK NAQLGHAQEN ILNKKEDKEG 360 EMGEKRSDSG AKLHQLLDPS PRDDAVAAG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 292 | RRSRLRK |
2 | 286 | 293 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490047.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X1 | ||||
Refseq | XP_012490048.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X1 | ||||
Swissprot | P42776 | 1e-125 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A0D2SB11 | 0.0 | A0A0D2SB11_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G105100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-118 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G105100.1 |
Entrez Gene | 105802762 |
Publications ? help Back to Top | |||
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