PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G099100.8
Common NameB456_007G099100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 398aa    MW: 43948.6 Da    PI: 5.0728
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G099100.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822145.35.4e-45732121133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  ++++   ss+s
  Gorai.007G099100.8  73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSSS 163
                         6899*****************************************************************9888899999755554444444 PP

              DUF822  88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                            s++ + + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Gorai.007G099100.8 164 qmLSQQVPPTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212
                         233333333336678999999********************98876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-3975211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.804.0E-62241375IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.4E-53242375IPR017853Glycoside hydrolase superfamily
PfamPF013737.8E-36255371IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-21268282IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-21289307IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-21311332IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060315323IPR018238Glycoside hydrolase, family 14, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QLGVVNMKCE LVDPDGLLKQ LRVLKSINVD GVMIDCWWGI VEADAPQEYN WNGYRRLFQM  300
VHELKLKLQV VMSFHECGGN VGDDVCIPLP HWVAEIGRSN PDIFFTDREG RRNTECLSWG  360
IDKERVLRGR TAVEVLVFNI TVNIIVYIMQ TAFVLNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1btc_A6e-4824237516149BETA-AMYLASE
1bya_A6e-4824237520153BETA-AMYLASE
1byb_A6e-4824237520153BETA-AMYLASE
1byc_A6e-4824237520153BETA-AMYLASE
1byd_A6e-4824237520153BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489941.10.0PREDICTED: beta-amylase 7-like isoform X3
SwissprotO808311e-160BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2SAN70.0A0A0D2SAN7_GOSRA; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-129beta-amylase 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]