PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G099100.7
Common NameB456_007G099100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 424aa    MW: 46814.1 Da    PI: 5.0882
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G099100.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221456.4e-45732121133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  ++++   ss+s
  Gorai.007G099100.7  73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSSS 163
                         6899*****************************************************************9888899999755554444444 PP

              DUF822  88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                            s++ + + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Gorai.007G099100.7 164 qmLSQQVPPTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212
                         233333333336678999999*******************998876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.5E-3975211IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.75E-59254401IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.0E-68257401IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.9E-38263397IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-21294308IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-21315333IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.2E-21337358IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060341349IPR018238Glycoside hydrolase, family 14, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI  300
DCWWGIVEAD APQEYNWNGY RRLFQMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA  360
EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VLVFNITVNI IVYIMQTAFV  420
LNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A8e-5525940111153BETA-AMYLASE
1byb_A8e-5525940111153BETA-AMYLASE
1byc_A8e-5525940111153BETA-AMYLASE
1byd_A8e-5525940111153BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489939.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2TCF60.0A0A0D2TCF6_GOSRA; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-150beta-amylase 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]