PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G099100.5
Common NameB456_007G099100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 672aa    MW: 75431.2 Da    PI: 5.3987
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G099100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822143.81.5e-44732121133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  ++++   ss+s
  Gorai.007G099100.5  73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSSS 163
                         6899*****************************************************************9888899999755554444444 PP

              DUF822  88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                            s++ + + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Gorai.007G099100.5 164 qmLSQQVPPTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212
                         233333333336678999999*******************998876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-3875211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.4E-192241665IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514457.43E-175242665IPR017853Glycoside hydrolase superfamily
PfamPF013733.2E-101255657IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67268282IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67289307IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67311332IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060315323IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.6E-8394403IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.9E-67404426IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67477496IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67511527IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67528539IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.9E-67546569IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.6E-8549559IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007503.9E-67586608IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.6E-8637651IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.6E-8652666IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QLGVVNMKCE LVDPDGLLKQ LRVLKSINVD GVMIDCWWGI VEADAPQEYN WNGYRRLFQM  300
VHELKLKLQV VMSFHECGGN VGDDVCIPLP HWVAEIGRSN PDIFFTDREG RRNTECLSWG  360
IDKERVLRGR TAVEVYFDFM RSFRVEFNEF FEDGIISMVE VGLGPCGELR YPSCPVKHGW  420
RYPGIGEFQC YDQYMLKSLM KAAEMRGHSF WARGPDNAGS YSSHPHETGF FCDEGDYDGY  480
YGRFFLNWYS QLLINHGDLV LSLAKLAFEG SCIAAKLPGI HWWYKTSSHA AELTAGFYNP  540
CNRDGYIAIA AMLHKHGAAL NFARAELQFL EQREDLQEAL ANPQGLVWQV LNAAWETCIT  600
VVSENAFVCH DRVGYNKILE NVKPVNDPDG RHFSSFTYLR LTPLLMERQN FMEFERFVKR  660
MHGEAVLYLQ V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14624266420444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489941.10.0PREDICTED: beta-amylase 7-like isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2P6G00.0A0A0D2P6G0_GOSRA; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]