PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G099100.4

Common Name

B456_007G099100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 619aa MW: 69082 Da PI: 5.2943

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G099100.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	144	1.3e-44	73	212	1	133
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+p ++++ ss+s Gorai.007G099100.4 73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSSS 163 6899***************************************************************9888899999755554444444 PP DUF822 88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133 s++ + + ++ +ss + ve ++ +k + +p p+ +d s+ ++ Gorai.007G099100.4 164 qmLSQQVPPTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212 233333333336678999999*****************998876543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.3E-39	75	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.65E-156	254	617	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	2.5E-173	257	617	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.8E-94	263	616	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	294	308	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	315	333	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	337	358	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	341	349	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	4.7E-60	430	452	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	503	522	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	537	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	554	565	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.7E-60	572	595	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI 60 QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN 120 DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS 180 GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE 240 QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI 300 DCWWGIVEAD APQEYNWNGY RRLFQMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA 360 EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VYFDFMRSFR VEFNEFFEDG 420 IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY MLKSLMKAAE MRGHSFWARG 480 PDNAGSYSSH PHETGFFCDE GDYDGYYGRF FLNWYSQLLI NHGDLVLSLA KLAFEGSCIA 540 AKLPGIHWWY KTSSHAAELT AGFYNPCNRD GYIAIAAMLH KHGAALNFAR AELQFLEQRE 600 DLQEALANPQ GLVWQVRF*

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI  300
DCWWGIVEAD APQEYNWNGY RRLFQMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA  360
EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VYFDFMRSFR VEFNEFFEDG  420
IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY MLKSLMKAAE MRGHSFWARG  480
PDNAGSYSSH PHETGFFCDE GDYDGYYGRF FLNWYSQLLI NHGDLVLSLA KLAFEGSCIA  540
AKLPGIHWWY KTSSHAAELT AGFYNPCNRD GYIAIAAMLH KHGAALNFAR AELQFLEQRE  600
DLQEALANPQ GLVWQVRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-134	259	616	11	366	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489940.1	0.0	PREDICTED: beta-amylase 7-like isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0D2TCF0	0.0	A0A0D2TCF0_GOSRA; Beta-amylase
STRING	Gorai.007G099100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Gorai.007G099100.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]