PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G099100.3
Common NameB456_007G099100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 557aa    MW: 61882 Da    PI: 5.185
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G099100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822144.31.1e-44732121133
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas 87 
                         gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p  ++++   ss+s
  Gorai.007G099100.3  73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgDSSAGLTSSSS 163
                         6899*****************************************************************9888899999755554444444 PP

              DUF822  88 ..aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                            s++ + + ++ +ss   + ve  ++ +k + +p p+ +d  s+ ++
  Gorai.007G099100.3 164 qmLSQQVPPTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212
                         233333333336678999999*******************998876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.7E-3975211IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.05E-125254545IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.2E-143257544IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.5E-80263544IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-42294308IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-42315333IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-42337358IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060341349IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007507.8E-42430452IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.8E-42503522IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLPDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI  300
DCWWGIVEAD APQEYNWNGY RRLFQMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA  360
EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VYFDFMRSFR VEFNEFFEDG  420
IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY MLKSLMKAAE MRGHSFWARG  480
PDNAGSYSSH PHETGFFCDE GDYDGYYGRF FLNWYSQLLI NHGDLVLSLA KLAFEGSCIA  540
AKVSTGGTKH PVMLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1uko_A1e-10825954711298Beta-amylase
1uko_B1e-10825954711298Beta-amylase
1uko_C1e-10825954711298Beta-amylase
1uko_D1e-10825954711298Beta-amylase
1ukp_A1e-10825954711298Beta-amylase
1ukp_B1e-10825954711298Beta-amylase
1ukp_C1e-10825954711298Beta-amylase
1ukp_D1e-10825954711298Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489939.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_012489940.10.0PREDICTED: beta-amylase 7-like isoform X2
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2SAN30.0A0A0D2SAN3_GOSRA; Beta-amylase
STRINGGorai.007G099100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]