PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G096000.1
Common NameB456_007G096000, LOC105802654
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 821aa    MW: 89138.3 Da    PI: 6.4643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G096000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21119174156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Gorai.007G096000.1 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 174
                         688999***********************************************999 PP
2START215.12.5e-673265501206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela++a++elvk+a+ +ep+W +s     e++n+de+l++f++  +     + +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +
  Gorai.007G096000.1 326 ELALAAMDELVKMAQTDEPLWIRSLeggrEILNQDEYLRTFTPCIGmksngFVTEASRESGMVIINSLALVETLMDSN-RWSEMFPcmiaR 415
                         5899**************************************9888999999**************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                          +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS++  ++ +  +s+v +++lpSg+++++++ng+s
  Gorai.007G096000.1 416 TSTTDVISSGvggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIETIRETSGAPSFVNCRRLPSGCVVQDMPNGYS 506
                         ****************************************************************999************************ PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwveh++++++++h+l+++l++sg+a+ga++wvatlqrqce+
  Gorai.007G096000.1 507 KVTWVEHAEYEESQVHQLYHPLLRSGMAFGAQRWVATLQRQCEC 550
                         ******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20102176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-21106176IPR009057Homeodomain-like
PROSITE profilePS5007117.216116176IPR001356Homeobox domain
SMARTSM003899.9E-18117180IPR001356Homeobox domain
CDDcd000861.32E-18118176No hitNo description
PfamPF000461.4E-18119174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084845.039317553IPR002913START domain
SuperFamilySSF559611.73E-34319550No hitNo description
CDDcd088753.01E-129321549No hitNo description
SMARTSM002347.4E-53326550IPR002913START domain
PfamPF018525.0E-59326550IPR002913START domain
SuperFamilySSF559616.28E-24578813No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MSFGGFLDNS TGGGFGGARM VADIPYSNNM ATGATAIAQP RLMSPSLPKN IFNSPGLSLA  60
LQPNIDNQGD HGSRIMRESL EGSVGRRSRE EEHESRSGSD NMDGASGDDQ DAADKPPRKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH  180
ENSLLRQEND KLRAENMSIR DAMRNPICTN CGGPAIIGDI SLEEQHLRIE NARLKDELDR  240
VCALAGKFLG RPISTLATSI APPLPNSSLE LGVGSNGFGA LSTVATTLPL APDFGGGMSN  300
ALIPASRPTT AVTGLDRSVE RSMFLELALA AMDELVKMAQ TDEPLWIRSL EGGREILNQD  360
EYLRTFTPCI GMKSNGFVTE ASRESGMVII NSLALVETLM DSNRWSEMFP CMIARTSTTD  420
VISSGVGGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSIETIRET  480
SGAPSFVNCR RLPSGCVVQD MPNGYSKVTW VEHAEYEESQ VHQLYHPLLR SGMAFGAQRW  540
VATLQRQCEC LAILMSSSVP TRDHTGITAS GRRSMLKLAQ RMTDNFCAGV CASTVHKWNK  600
LNVGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL  660
SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL QETCIDAAGS LVVYAPVDIP  720
AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPTSNGQVN RNGGGGGGAQ RVGGSLLTVA  780
FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489878.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D2QPM00.0A0A0D2QPM0_GOSRA; Uncharacterized protein
STRINGGorai.007G096000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]