PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G092400.1
Common NameB456_007G092400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 445aa    MW: 48628.6 Da    PI: 9.911
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G092400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.7e-23139184146
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                         d+epgrCrRtDGKkWRCs++v++ +k+CE H+hrg+ rsrk++e+s
  Gorai.007G092400.1 139 DPEPGRCRRTDGKKWRCSKNVIPYQKYCEQHMHRGCRRSRKPVETS 184
                         79****************************************9975 PP
2WRC65.66.7e-21336375242
                 WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                          epgrCrRtDGK+WRCsr+v++++k+C rH+hrg  r++++
  Gorai.007G092400.1 336 LEPGRCRRTDGKRWRCSRDVIPDQKYCARHMHRGA-RKQTE 375
                         59********************************5.55544 PP
3QLQ32.82.2e-1270104337
                 QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         FT aQl+ L  Q l++Ky+a + +vP +L+ +i+k
  Gorai.007G092400.1  70 FTTAQLHDLQLQTLIFKYIAGGIQVPVNLVIPIWK 104
                         *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166615.20869104IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-870103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.906139183IPR014977WRC domain
PfamPF088794.1E-18140182IPR014977WRC domain
PROSITE profilePS5166721.734335379IPR014977WRC domain
PfamPF088798.2E-18337374IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDAQPVQTRI LPDSGGGGSG AQERLEGKGR TVKMEEEETE KGGSPSIKLG LGIDGTTSEK  60
PVKKHGKCVF TTAQLHDLQL QTLIFKYIAG GIQVPVNLVI PIWKSVASSF GSARGCIYER  120
YPSFVGVSPQ ALDYRNMADP EPGRCRRTDG KKWRCSKNVI PYQKYCEQHM HRGCRRSRKP  180
VETSQSALPD STSSKFSIRL SENSKNLPTP VSFQYTNPFS CNTSTSHGTT AIESNNVCSN  240
RNSISINAAT SGTIIATMKN DNKNDPKRNK NVTNTSEKGE EKLSVSNNNT IKRSSKSGNK  300
ATVGNNISPS VGFSPKSVLQ VLGNSSSRAY KNEIELEPGR CRRTDGKRWR CSRDVIPDQK  360
YCARHMHRGA RKQTEVSQPV AVPSVGECRP PSRLTTAYKA ACPALSTSLS ISIPRSQYIA  420
EDEKSTSSSS ETTISDTNDY CLRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489795.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 9
TrEMBLA0A0D2P5U70.0A0A0D2P5U7_GOSRA; Uncharacterized protein
STRINGGorai.007G092400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.15e-45growth-regulating factor 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]