PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G091600.1 | ||||||||
Common Name | B456_007G091600, LOC105802602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20412.2 Da PI: 8.8172 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.7 | 5.3e-40 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l Gorai.007G091600.1 9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVNL 99 7***********************9988*************************************************************** PP DUF260 91 kaelallkee 100 +aela+++++ Gorai.007G091600.1 100 QAELAYTQAR 109 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.112 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-39 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV 60 HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVVNLQ AELAYTQARL STLQRHPPSS 120 SLIGSDLMSS SNMSTHFDPP QQTSVGLSSF PNSFDQVAEN EQLQVLTREF VSRYLPGVRF 180 HPSTST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 5 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 5 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00313 | DAP | Transfer from AT2G45410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489773.1 | 1e-138 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 2e-67 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | A0A0D2SGW6 | 1e-136 | A0A0D2SGW6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G091600.1 | 1e-137 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 4e-68 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G091600.1 |
Entrez Gene | 105802602 |
Publications ? help Back to Top | |||
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