PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G088300.2
Common NameB456_007G088300, LOC105802570
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 468aa    MW: 50874.7 Da    PI: 8.1594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G088300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15292337555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Gorai.007G088300.2 292 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 337
                         9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-19284348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13292337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-16292341No hitNo description
Gene3DG3DSA:4.10.280.107.5E-18292345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MSQCVPSWDL DDNHVTARHS LRSNSNSTAP DVHMSDYEVA ELTWENGQLA MHGLGPARVP  60
AKPLVSNPPS KYTWDKPRAN GTLESIVNQA TRVPYLKVSL DDGRDELVPC LNQHREAAAS  120
SATIAMDALV PCSKRTEGRT AHAMESIPGL GRTCLVGGST RVGSCSGRAG THDDEVLVSG  180
KRTRAARAPL MPEWSSKEQS ASASATFGRE RDSRCVTLDT YEKDFGMGFT STSLGSPENA  240
SSTKPCTKAT TTADDHDSVC HSRPQREEFE EDKKETGKSS VSNKRSRAAA IHNQSERKRR  300
DKINQRMKTL QKLVPNSSKT DKASMLDEVI EYLKQLQAQV QMMNRMNIPQ MMLPMAMQQP  360
LQMSMLAPAM GMGMGMGMGM GVMDINTIGR PNITGISPVM PNPFMAMTSW DGSGERLQQA  420
ASAAAMMPDP LSTFLACQSQ PMTMDAYSRL AAMYQQMQQP PASGSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300ERKRRD
2296301RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932931e-113GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489734.10.0PREDICTED: transcription factor UNE10
SwissprotQ8GZ381e-115UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D2P5P30.0A0A0D2P5P3_GOSRA; Uncharacterized protein
STRINGGorai.007G088300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]