PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G087900.1
Common NameB456_007G087900, LOC105802561
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 421aa    MW: 45856.1 Da    PI: 7.6643
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G087900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.9e-41186262177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +CqvegC++ l +akeyhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk +
  Gorai.007G087900.1 186 RCQVEGCDVALVNAKEYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKGS 262
                         6*************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-35179248IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.402184261IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38185265IPR004333Transcription factor, SBP-box
PfamPF031102.1E-32187260IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MENGGSMYLG SKGQTGNNSI NLAWDLGELN PTSTRFDWGG NDNINAFNLY ASTTSTTSSS  60
RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLTHHLNQE HSLYAGDGSH MHPDPHLVCL  120
KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGGVSGGVEP SSPIAVMGSP  180
ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF  240
DDSKRSCRRR LAGHNERRRK GSHDSASRNS AQDAKLKTGR FPYHLSLPKG RALSLLSSRA  300
DSWISPSDLS SRSSTALQEL IAENRAAVLA RQLVLDRGWQ LNHRGMEDLG VFSSTTAEQH  360
SLLPEPPQGW EKFQETGAEL TLNLMQASSS ASGMFVRGKS EDEEQECSEL WNSLQGTHVV  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30178260184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223320.0KJ622332.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489722.10.0PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ7XT421e-59SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A0D2QP600.0A0A0D2QP60_GOSRA; Uncharacterized protein
STRINGGorai.007G087900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15613914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-36squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]