PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G086700.1 | ||||||||
Common Name | B456_007G086700, LOC105802549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 302aa MW: 33166.2 Da PI: 6.6542 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 139 | 193 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Gorai.007G086700.1 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTK 193 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.7 | 1e-40 | 139 | 228 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la +L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +l Gorai.007G086700.1 139 RKKLRLSKEQSLVLEETFKEHSTLNPKQKLALAMQLNLRPRQVEVWFQNRRARTKSKQTEVDCEYLKRCCDNLTEENRRLQKEVQELR-AL 228 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 3.7E-31 | 1 | 108 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 114 | 196 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.64E-19 | 122 | 197 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 135 | 195 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-15 | 137 | 199 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-16 | 139 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.47E-15 | 139 | 196 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 170 | 193 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-25 | 195 | 238 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.0E-12 | 195 | 229 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGDKDDGLGL SLSLGCAQNQ PSLKLNLMPL ASPCMQNLQQ RNIWNELFQS SVFVIDRMHA 60 DGQLETRSVA GGIDVNQAPA LAECEEEDVV SSPNSTVSSI GGKRNERDPV CDETEAERPS 120 CSRSSDDEDG GGAGDDASRK KLRLSKEQSL VLEETFKEHS TLNPKQKLAL AMQLNLRPRQ 180 VEVWFQNRRA RTKSKQTEVD CEYLKRCCDN LTEENRRLQK EVQELRALKL SPQLYTHINP 240 PTTLTMCPSC ERVAVASSSS SSLAASSAPN SKHQRPVPAS SWAALPLPVT HRPFNAPASR 300 P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 143 | SRKKLRL |
2 | 187 | 195 | RRARTKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489703.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT3-like isoform X1 | ||||
Swissprot | P46602 | 5e-99 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0D2S9H5 | 0.0 | A0A0D2S9H5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G086700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 9e-88 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G086700.1 |
Entrez Gene | 105802549 |
Publications ? help Back to Top | |||
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