PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G086100.1
Common NameB456_007G086100, LOC105802541
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 25794.1 Da    PI: 5.4558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G086100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18109159356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +kGVr+++ +g ++AeIrdp+   k  r++lg++ t+e+Aa a+++a+ +++g+
  Gorai.007G086100.1 109 FKGVRRRP-WGTYAAEIRDPKR--KGGRIWLGTYETPEDAALAYDKAAFEMHGA 159
                         8*******.**********843..349*************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.08E-27108168No hitNo description
PfamPF008479.3E-12108158IPR001471AP2/ERF domain
PROSITE profilePS5103222.748108166IPR001471AP2/ERF domain
SMARTSM003802.1E-32108172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30108167IPR001471AP2/ERF domain
PRINTSPR003674.5E-8109120IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21109167IPR016177DNA-binding domain
PRINTSPR003674.5E-8132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKRFVENNIS DSELNMYLVD GFDECPATTA FTGVVPEPFY NRSSSFSGVF LNESRGDLPL  60
KIDDSEDMLV YGALRDAANP GWSGPSEVDL KTVAEAEVEV AVPQQEMRFK GVRRRPWGTY  120
AAEIRDPKRK GGRIWLGTYE TPEDAALAYD KAAFEMHGAK AKLNFPHLIG TDCSWEPIRV  180
GSRRRSPEHS AWTALSGSTN CPAKPKKKKN REISIQAEAS LAAEMIEMSP FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24109166360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-24109166663ATERF1
3gcc_A3e-24109166663ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489696.11e-173PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K19e-59ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A0D2P5I01e-172A0A0D2P5I0_GOSRA; Uncharacterized protein
STRINGGorai.007G086100.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-59ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]