PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G081700.1

Common Name

B456_007G081700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 705aa MW: 80982.7 Da PI: 6.9938

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G081700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.9	1.1e-30	66	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn+YAk++GFs+r+++ ++sk+++ i++r+f+Cskeg+r++++++ ++k+rr r+ tr gCka ++v+k+++gkw+v+kle++H Gorai.007G081700.1 66 NFYNAYAKQTGFSIRMNSYYRSKKDNLIISREFCCSKEGFRRDKHSRktdsgdDTKRRRARPITREGCKALMTVRKRENGKWYVAKLEKNH 156 6**************************************99998889999999******************************** PP FAR1 86 nHela 90 nHel+ Gorai.007G081700.1 157 NHELV 161 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-28	66	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-33	282	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.622	564	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-9	574	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-10	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MADSYVALEE EGDGCCVVEE NENPMVLYDF RKEDEHLNLE FSQHVVGGVV EPTLDMEFIS 60 EDDARNFYNA YAKQTGFSIR MNSYYRSKKD NLIISREFCC SKEGFRRDKH SRKTDSGDDT 120 KRRRARPITR EGCKALMTVR KRENGKWYVA KLEKNHNHEL VIPAMRHFLR SHKEEDDPKK 180 SLNGTIGSMG VGLNASVNVS PEDYNSFGKL GFAAQNNVNF IRRGRLSNFG VDAQSLLAFV 240 KVMQTSDPAF YYAIQVDDED RLRSVFWVDT RSRIAYNCFS DVISFDTTYQ VNQYKMPFAP 300 FIGVNHHRQS VLFGCALLAD ETESTFIWLF TTWLEAMSGR QPGLIMTDYD SAISRAVESV 360 FPKSRHRYCK RHILSKIPKE IGHVFSSLPK TFQVEFEKCI NNSETPEEFE SAWQLLLDKC 420 SLRGNEWLQS LYNDRKLWVS TYVRDTFFAG MYSIQPSKSV SSLFDGYVNA GTALQDLAEQ 480 YERALDGRYE KEVRAEFETF YTKPVLKTPL PMEKQAAEVY TRKLFLVFQD EIYESLVLAV 540 KSSLDDGLSK TFEVARFDEE HKVYRVGINI ADQIASCSCK MFEFEGILCR HVIAVFKATN 600 IFLLPQHYIL KRWTKNAKEE AKFDALPSVE IHDNSRKGKK QYNLLYQEAI KCAEEGMASD 660 HSFNVALNAL REARIKIVSA KKNAINVQKL ETASSTHYTD DKTT*

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MADSYVALEE EGDGCCVVEE NENPMVLYDF RKEDEHLNLE FSQHVVGGVV EPTLDMEFIS  60
EDDARNFYNA YAKQTGFSIR MNSYYRSKKD NLIISREFCC SKEGFRRDKH SRKTDSGDDT  120
KRRRARPITR EGCKALMTVR KRENGKWYVA KLEKNHNHEL VIPAMRHFLR SHKEEDDPKK  180
SLNGTIGSMG VGLNASVNVS PEDYNSFGKL GFAAQNNVNF IRRGRLSNFG VDAQSLLAFV  240
KVMQTSDPAF YYAIQVDDED RLRSVFWVDT RSRIAYNCFS DVISFDTTYQ VNQYKMPFAP  300
FIGVNHHRQS VLFGCALLAD ETESTFIWLF TTWLEAMSGR QPGLIMTDYD SAISRAVESV  360
FPKSRHRYCK RHILSKIPKE IGHVFSSLPK TFQVEFEKCI NNSETPEEFE SAWQLLLDKC  420
SLRGNEWLQS LYNDRKLWVS TYVRDTFFAG MYSIQPSKSV SSLFDGYVNA GTALQDLAEQ  480
YERALDGRYE KEVRAEFETF YTKPVLKTPL PMEKQAAEVY TRKLFLVFQD EIYESLVLAV  540
KSSLDDGLSK TFEVARFDEE HKVYRVGINI ADQIASCSCK MFEFEGILCR HVIAVFKATN  600
IFLLPQHYIL KRWTKNAKEE AKFDALPSVE IHDNSRKGKK QYNLLYQEAI KCAEEGMASD  660
HSFNVALNAL REARIKIVSA KKNAINVQKL ETASSTHYTD DKTT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628148.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017628149.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2QNQ7	0.0	A0A0D2QNQ7_GOSRA; Uncharacterized protein
STRING	Gorai.007G081700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.007G081700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]