PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G079300.1

Common Name

B456_007G079300, LOC105802472

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 516aa MW: 55911.5 Da PI: 5.6985

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G079300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	151	211	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Gorai.007G079300.1 151 PTKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 211 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	133	208	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.1E-32	153	209	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	155	209	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	157	193	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MSEPKDPAIK LFGKMIPLPE KSPKVATADF CATCGDDNTN NDNTDHSCST NSSPEENKGE 60 EREAEKDTVG AKTTDVEHEV ADRKEEEGSK QDDGAPPVTS GESTNLEANS GASDNSKTPS 120 AEKESTALKT SKTEEDQSET SNPQEKTLKK PTKILPCPRC NSMDTKFCYY NNYNVNQPRH 180 FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS ASHYRQVTVS EALQNARIDI PNGVHHPALK 240 ANGTVLTFGS DAPLCESMAS VLNLADKTMH NTTRNGFHRP EEVKIPVSYK DGENGVECSN 300 GSSVPTSKDE AGKSGLQDQM MQNCQGFPPQ MQCYPGAFWP YPWNSAQWSS PVPPPPPAFC 360 PPGCYPMPFY PAAAYWGCTV PGTWNGPWHP QPSPSKQSAS SSGPDSPTLG KHSRDENTSK 420 PSNSGEEEQV KENNAERSLW IPKTLRIDDP GEAAKSSIWA TLGIKNDKSD SIGGGGLFKA 480 FQSKGDERTE VPETSPVLQA NPAALSRSIN FRESS*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MSEPKDPAIK LFGKMIPLPE KSPKVATADF CATCGDDNTN NDNTDHSCST NSSPEENKGE  60
EREAEKDTVG AKTTDVEHEV ADRKEEEGSK QDDGAPPVTS GESTNLEANS GASDNSKTPS  120
AEKESTALKT SKTEEDQSET SNPQEKTLKK PTKILPCPRC NSMDTKFCYY NNYNVNQPRH  180
FCKNCQRYWT AGGTMRNVPV GAGRRKNKNS ASHYRQVTVS EALQNARIDI PNGVHHPALK  240
ANGTVLTFGS DAPLCESMAS VLNLADKTMH NTTRNGFHRP EEVKIPVSYK DGENGVECSN  300
GSSVPTSKDE AGKSGLQDQM MQNCQGFPPQ MQCYPGAFWP YPWNSAQWSS PVPPPPPAFC  360
PPGCYPMPFY PAAAYWGCTV PGTWNGPWHP QPSPSKQSAS SSGPDSPTLG KHSRDENTSK  420
PSNSGEEEQV KENNAERSLW IPKTLRIDDP GEAAKSSIWA TLGIKNDKSD SIGGGGLFKA  480
FQSKGDERTE VPETSPVLQA NPAALSRSIN FRESS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489583.1	0.0	PREDICTED: cyclic dof factor 3 isoform X1
TrEMBL	A0A0D2S939	0.0	A0A0D2S939_GOSRA; Uncharacterized protein
STRING	Gorai.007G079300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-102	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.007G079300.1
Entrez Gene	105802472

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]