PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G066100.1

Common Name

B456_007G066100, LOC105801438

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 205aa MW: 23354.9 Da PI: 7.0438

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G066100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.2	1.5e-55	38	133	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianvsri+kkv+P+n+kiskdaket+qecvsefisfvt+easdkcqrekrktingdd++wa++tlGfe+yv plk+yl+kyre Gorai.007G066100.1 38 KEQDRFLPIANVSRILKKVIPSNGKISKDAKETIQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVGPLKLYLSKYRE 128 89*************************************************************************************** PP NF-YB 93 legek 97 +egek Gorai.007G066100.1 129 MEGEK 133 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-52	32	154	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-40	40	175	IPR009072	Histone-fold
Pfam	PF00808	5.7E-27	43	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.9E-19	71	89	No hit	No description
PROSITE pattern	PS00685	0	74	90	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.9E-19	90	108	No hit	No description
PRINTS	PR00615	3.9E-19	109	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEDEIKHGNV THVPNKGSPE SPHVACSDSN HNQNNNNKEQ DRFLPIANVS RILKKVIPSN 60 GKISKDAKET IQECVSEFIS FVTGEASDKC QREKRKTING DDIIWAITTL GFEEYVGPLK 120 LYLSKYREME GEKLIFPKQQ RSDQRRQHSE YEQNIVFNNN NNININTNSN NNVYSSINVY 180 PSFVPSDQPF SLPFSSNSFQ KQLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-44	38	128	2	92	Transcription factor HapC (Eurofung)
4g92_B	1e-44	38	128	2	92	Transcription factor HapC (Eurofung)
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and green siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488195.1	1e-149	PREDICTED: nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	2e-62	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A0D2TA14	1e-148	A0A0D2TA14_GOSRA; Uncharacterized protein
STRING	Gorai.007G066100.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	3e-61	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	Gorai.007G066100.1
Entrez Gene	105801438

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]