PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G060600.1
Common NameB456_007G060600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 352aa    MW: 39713.8 Da    PI: 6.6664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G060600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.3e-07138159223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++C ksF+r  nL+ H+r H
  Gorai.007G060600.1 138 FCEICRKSFKRDANLRMHMRAH 159
                         6*******************99 PP
2zf-C2H211.20.0012226249123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y+C+ C+ ksFs   +Lk H++++
  Gorai.007G060600.1 226 YRCNRCHkKSFSILVDLKAHLKNC 249
                         9********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-6133160No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5134159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448137164IPR007087Zinc finger, C2H2
SMARTSM003550.0063137159IPR015880Zinc finger, C2H2-like
PfamPF128741.6E-4138157No hitNo description
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SMARTSM0035545188221IPR015880Zinc finger, C2H2-like
SMARTSM00355130226247IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSIPAEPFRI SSEYPGNGGP SRQQHDPIAL AADLRVPLQN LSTVKRRMDS LQDFLSLSVN  60
TNTLISKDQM DLVSSEIADA VHQIITNSAA LLSCAQKTHC RNSNPTPELK PEFEDSDEGE  120
SDVIEVDAVE LLSEHLHFCE ICRKSFKRDA NLRMHMRAHG DQYKTPEALA RKSENNSDVM  180
NPGRKTRFSC PYEGCNRNKK HHKFRSLKSV ICVRNHFKRS HCPKMYRCNR CHKKSFSILV  240
DLKAHLKNCG VGEESKKWKC SCGNGFSRKD KLFGHISLFE GHMPAVAAEE DKKLKGVVAM  300
EEVEDEDEDE LTEKESYLYD GFFNDLDLLD GSGSFENYSL QDVLGPSRDV L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488190.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A0D2QM820.0A0A0D2QM82_GOSRA; Uncharacterized protein
STRINGGorai.007G060600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-71C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]