PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G056300.2

Common Name

B456_007G056300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 209aa MW: 22375.6 Da PI: 8.4279

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G056300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	63.8	4.4e-20	2	94	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l+ ++ p++q ++ +v+k+FG++ ++++++a+pe +r+ A+ r+ +Pv+Gavg++++++++++ Gorai.007G056300.2 2 SCNGCRVLRKGCSESCILRSCLqwianPESQGFATLFVAKFFGRAGLMSFISAVPEPQRP---------ACGRTVNPVNGAVGLLWTGNWHVC 85 6***********************999**************************8.........89****************** PP DUF260 89 qlkaelall 97 q+++e++l+ Gorai.007G056300.2 86 QAAVETVLR 94 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.486	1	98	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-15	2	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIANPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR 60 PACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGTLRP IPELPAPTES NEASEAAGTA 120 DMWKLQETAT SLNSNCRFSS HKRRTIGELK KLQPSDLDLC LTPSFKGNRV LDNRRPGTPS 180 VISDESVTTA TCSESGFAGQ GKLLNLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016731002.1	1e-151	PREDICTED: LOB domain-containing protein 38-like isoform X2
Swissprot	Q9SZE8	1e-67	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D2P3J0	1e-150	A0A0D2P3J0_GOSRA; Uncharacterized protein
STRING	Gorai.007G056300.1	1e-148	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	5e-70	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Gorai.007G056300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]