PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G056300.1

Common Name

B456_007G056300, LOC105802239

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 218aa MW: 23424.8 Da PI: 8.2675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G056300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	8e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+ ++ p++q ++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++ Gorai.007G056300.1 2 SCNGCRVLRKGCSESCILRSCLqwianPESQGFATLFVAKFFGRAGLMSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 6***********************999********************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Gorai.007G056300.1 93 VCQAAVETVLR 103 ***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.305	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR SCLQWIANPE SQGFATLFVA KFFGRAGLMS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELPAPTESN 120 EASEAAGTAD MWKLQETATS LNSNCRFSSH KRRTIGELKK LQPSDLDLCL TPSFKGNRVL 180 DNRRPGTPSV ISDESVTTAT CSESGFAGQG KLLNLFV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489212.1	1e-158	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SZE8	2e-77	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D2QM16	1e-157	A0A0D2QM16_GOSRA; Uncharacterized protein
STRING	Gorai.007G056300.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	8e-80	LOB domain-containing protein 39

Link Out ? help Back to Top
Phytozome	Gorai.007G056300.1
Entrez Gene	105802239

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]