PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G056200.1
Common NameB456_007G056200, LOC105802238
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 456aa    MW: 50725 Da    PI: 6.3428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G056200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.22.6e-92534522373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsev 87 
                         ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl++ f++AL  r a+  s+ +k l++ +++++n s e++ +++     f+++
  Gorai.007G056200.1  53 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLQALIVRAAK--SGSCKMLAAMANAHRNLSVETHTFSVielanFVDL 141
                         79****************************************************..6666666666666666555555554445599**** PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                         +P+++f++ taN aIleaveg + +Hi+D++ ++++Q p+L++a+a+R egpp +++T+ g p+ +      ++ee+g++L +fA++ +v 
  Gorai.007G056200.1 142 TPWHRFGFTTANAAILEAVEGYSVIHIVDLSSTYCMQIPTLIDAIANRFEGPPLVKLTVPGVPKDVpplLDLTYEELGSKLVNFARSRNVM 232
                         **************************************************************99999888999****************** PP

                GRAS 176 fefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvv 241
                         +ef+++   +a+ +++l +++Lr+++      gEal++n++++lh+++                 +++  +s r+ +Lk++++l+P++ ++
  Gorai.007G056200.1 233 LEFRAVpstHADGFASL-IDQLRLQHsvyaeaGEALVINCHMMLHYIPeetssplpntnsnpytFQPTLNPSLRTMFLKALRGLNPTIAIL 322
                         *****988666666666.88898888888899***************************9999867777777899**************** PP

                GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                         v+++ad++s++++ r+ +a++y +  +d++++ lp  s++r+++E+  + ++++nv+a+eg +r+er e++++W +r+++a F+ v+++++
  Gorai.007G056200.1 323 VDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPIGSKQRQWYEAN-ICWKVENVIAHEGLQRVERVESKSRWVQRMRNAQFRGVSFGDE 412
                         ***********************************************.******************************************* PP

                GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +++++k++l +++  g+ +++e++ lvl+Wk++++v+++aW
  Gorai.007G056200.1 413 TVSEVKTMLDEHA-AGWGLKKEDDDLVLTWKGHNVVFATAW 452
                         *************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.52326434IPR005202Transcription factor GRAS
PfamPF035148.9E-9053452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MLQFTGTPSH FLHQIAPFSI PTMNKNQIHQ ARPWPGFPTS KGLASFGDAN CMEQLLVHCA  60
NAIESNDATL AQQILWVLNN IAPPDGDSNQ RLTSAFLQAL IVRAAKSGSC KMLAAMANAH  120
RNLSVETHTF SVIELANFVD LTPWHRFGFT TANAAILEAV EGYSVIHIVD LSSTYCMQIP  180
TLIDAIANRF EGPPLVKLTV PGVPKDVPPL LDLTYEELGS KLVNFARSRN VMLEFRAVPS  240
THADGFASLI DQLRLQHSVY AEAGEALVIN CHMMLHYIPE ETSSPLPNTN SNPYTFQPTL  300
NPSLRTMFLK ALRGLNPTIA ILVDEDADLT SNNLVCRLRS AFNYLWIPYD TVDTFLPIGS  360
KQRQWYEANI CWKVENVIAH EGLQRVERVE SKSRWVQRMR NAQFRGVSFG DETVSEVKTM  420
LDEHAAGWGL KKEDDDLVLT WKGHNVVFAT AWVPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-494745482474Protein SHORT-ROOT
5b3h_B5e-504745428420Protein SHORT-ROOT
5b3h_E5e-504745428420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489208.10.0PREDICTED: scarecrow-like protein 32 isoform X1
RefseqXP_012489209.10.0PREDICTED: scarecrow-like protein 32 isoform X1
RefseqXP_012489210.10.0PREDICTED: scarecrow-like protein 32 isoform X1
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0D2SEN80.0A0A0D2SEN8_GOSRA; Uncharacterized protein
STRINGGorai.007G056200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]