PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G053200.1

Common Name

B456_007G053200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 735aa MW: 85568.5 Da PI: 7.7662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G053200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.2	2.2e-07	24	92	16	88
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +++ +k k+ng + tf C + g+ + ++++ +++ +++t+Ck +l+ + k + w + + +HnH+ Gorai.007G053200.1 24 VTRRSKAKENGVVSYVTFICDRGGEYKFKESS-----KKSGTKKTNCKFRLVGSYLKqYDGWTLRVICDQHNHP 92 556677789*************99988777.....88999*****999877699***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-5	23	92	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-26	190	285	IPR018289	MULE transposase domain
SuperFamily	SSF54001	9.32E-5	543	623	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MFESREELMQ WVQSTAFSLD YIIVTRRSKA KENGVVSYVT FICDRGGEYK FKESSKKSGT 60 KKTNCKFRLV GSYLKQYDGW TLRVICDQHN HPPAQHMEGH AYARRLKENE KKLLVDLTSK 120 NVTPHDILST LKEQDENNNV GKTPIQVLML LLNDKQFFTE FSVNNISNEL ENLFFIHPRS 180 LDIWRAFSHV LIVDAMYKTN KYDLPFVQIV DVTSTNKTFS IAFAFIINEK EENYNWALTC 240 LKLTLEGCMY LRVIVTDKEL ALMNACQQVF PDATRLLCRW HITENIKKHY RQSIKSQHER 300 DSIRAMWTVL VESPTWIFKY KEMFVLVWID RHLNFGEQTT NRVESQHAKL KKYICAKNSS 360 LDKFVGCIDQ NVKSQLTSIY ESFEKSRIVL KHRHNLQCFR LFRGFVALEA LDILEGELQW 420 SSRHQLDYSN CGCKLRHSCG VPCACMLSVY LNSGECIPLD SIDVFWRKLD LSPSTSVENE 480 DICCDSELEM FKENFTKQSK AGKKSLLRKL RDIFQLKLNK EPAKHSSYII EILDLNQEPS 540 EQVSDFIDLN QMPKSCDTHP LMKEILDMFH PYITHVQDVK GDGNCRFQAI SVCLGYGEDQ 600 WLYVRHQLLD ELLSSYDVYA RVFTDGIDEL RNSLCFSQSP APAEHWMVMP ITGVLIANRF 660 GVILNYLTKR GDITFFPLWR EGDYPMPTIS ACWIRHRAPS TAGWQTMYMS RLEFYRQLKP 720 CNLKTPVITI ENYC*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MFESREELMQ WVQSTAFSLD YIIVTRRSKA KENGVVSYVT FICDRGGEYK FKESSKKSGT  60
KKTNCKFRLV GSYLKQYDGW TLRVICDQHN HPPAQHMEGH AYARRLKENE KKLLVDLTSK  120
NVTPHDILST LKEQDENNNV GKTPIQVLML LLNDKQFFTE FSVNNISNEL ENLFFIHPRS  180
LDIWRAFSHV LIVDAMYKTN KYDLPFVQIV DVTSTNKTFS IAFAFIINEK EENYNWALTC  240
LKLTLEGCMY LRVIVTDKEL ALMNACQQVF PDATRLLCRW HITENIKKHY RQSIKSQHER  300
DSIRAMWTVL VESPTWIFKY KEMFVLVWID RHLNFGEQTT NRVESQHAKL KKYICAKNSS  360
LDKFVGCIDQ NVKSQLTSIY ESFEKSRIVL KHRHNLQCFR LFRGFVALEA LDILEGELQW  420
SSRHQLDYSN CGCKLRHSCG VPCACMLSVY LNSGECIPLD SIDVFWRKLD LSPSTSVENE  480
DICCDSELEM FKENFTKQSK AGKKSLLRKL RDIFQLKLNK EPAKHSSYII EILDLNQEPS  540
EQVSDFIDLN QMPKSCDTHP LMKEILDMFH PYITHVQDVK GDGNCRFQAI SVCLGYGEDQ  600
WLYVRHQLLD ELLSSYDVYA RVFTDGIDEL RNSLCFSQSP APAEHWMVMP ITGVLIANRF  660
GVILNYLTKR GDITFFPLWR EGDYPMPTIS ACWIRHRAPS TAGWQTMYMS RLEFYRQLKP  720
CNLKTPVITI ENYC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749760.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2QLW8	0.0	A0A0D2QLW8_GOSRA; Uncharacterized protein
STRING	Gorai.007G053200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.007G053200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]