PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G053100.1

Common Name

B456_007G053100, LOC105802212

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 346aa MW: 38664.7 Da PI: 6.5185

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G053100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	217	272	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+ Fv+a++qLGGs++AtPk+i+e+m+v++Lt+++vkSHLQkYRl+ Gorai.007G053100.1 217 KQRRCWSPELHRLFVDALQQLGGSQVATPKQIKEVMQVDDLTNDEVKSHLQKYRLH 272 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-28	214	275	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.123	214	274	IPR017930	Myb domain
SuperFamily	SSF46689	5.82E-18	215	275	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-26	217	272	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	219	270	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MELSLDLSSV FVPKTITEFL KEASKIKDGF QKSSKISDYV KRLEDEMKKI DGFKRELPLC 60 MLLLKDGIER LKVEEVQCKE TDDGLPLKEN DDSDKTNWLS SVQLWNSDFN IVDHNKKPNT 120 VSELKPRSGR EEEEDMSENP IKVCNSKSRG GAFVPFKDIS GIPLMNPSFE LVSCNGILRN 180 NGGCTIGSGS SLTAEKTHIK FQTESQDQQK QQQSSRKQRR CWSPELHRLF VDALQQLGGS 240 QVATPKQIKE VMQVDDLTND EVKSHLQKYR LHIRKLPPSS ARNQCNENMK SQSGSPQCPL 300 TVSALAKGMS STGGDSMDGE DDEKSDGLSW RSGVHKPGEI ECIVR*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MELSLDLSSV FVPKTITEFL KEASKIKDGF QKSSKISDYV KRLEDEMKKI DGFKRELPLC  60
MLLLKDGIER LKVEEVQCKE TDDGLPLKEN DDSDKTNWLS SVQLWNSDFN IVDHNKKPNT  120
VSELKPRSGR EEEEDMSENP IKVCNSKSRG GAFVPFKDIS GIPLMNPSFE LVSCNGILRN  180
NGGCTIGSGS SLTAEKTHIK FQTESQDQQK QQQSSRKQRR CWSPELHRLF VDALQQLGGS  240
QVATPKQIKE VMQVDDLTND EVKSHLQKYR LHIRKLPPSS ARNQCNENMK SQSGSPQCPL  300
TVSALAKGMS STGGDSMDGE DDEKSDGLSW RSGVHKPGEI ECIVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527101	8e-50	HQ527101.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DTG6D simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489168.1	0.0	PREDICTED: uncharacterized protein LOC105802212
TrEMBL	A0A0D2P3D0	0.0	A0A0D2P3D0_GOSRA; Uncharacterized protein
STRING	Gorai.007G053100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G053100.1
Entrez Gene	105802212

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]