PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G051100.2
Common NameB456_007G051100, LOC105801430
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 161aa    MW: 18797.3 Da    PI: 7.0614
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G051100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20357357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        k++++++eq++ Le +F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Gorai.007G051100.2  3 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 57
                        56699************************************************95 PP
2HD-ZIP_I/II117.86.1e-38393292
         HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                        kkr+ls+eqv lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE+ +++Lk+ + +++ e++rLe+ev++L+e+l 
  Gorai.007G051100.2  3 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEGFSKLKSDHHEVVLEKCRLESEVTKLKEKLC 93
                        9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-19162IPR001356Homeobox domain
PROSITE profilePS5007117.346158IPR001356Homeobox domain
PfamPF000461.1E-17357IPR001356Homeobox domain
SuperFamilySSF466892.34E-18367IPR009057Homeodomain-like
CDDcd000864.76E-16359No hitNo description
Gene3DG3DSA:1.10.10.604.2E-21564IPR009057Homeodomain-like
PRINTSPR000318.8E-62938IPR000047Helix-turn-helix motif
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PRINTSPR000318.8E-63854IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTKKRKLSQE QVDLLEHHFG NEHKLESERK DRLASELGLD PRQVAVWFQN RRARWKNKKL  60
EEGFSKLKSD HHEVVLEKCR LESEVTKLKE KLCEAKKEIQ RLGERVDRGS SNSPSSSLTM  120
EAMDTPFLGE FGLEGYDNVF YIAENSYNNI PGMEWMNMYM *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488188.11e-116PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232082e-60ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2P3861e-115A0A0D2P386_GOSRA; Uncharacterized protein
TrEMBLA0A0D2QLT61e-115A0A0D2QLT6_GOSRA; Uncharacterized protein
STRINGGorai.007G051100.11e-115(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-56homeobox protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]