PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G051100.1 | ||||||||
Common Name | B456_007G051100, LOC105801430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 24043.2 Da PI: 9.0076 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le +F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Gorai.007G051100.1 49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103 56699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 116.9 | 1.2e-37 | 49 | 139 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE+ +++Lk+ + +++ e++rLe+ev++L+e+l Gorai.007G051100.1 49 KKRKLSQEQVDLLEHHFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEGFSKLKSDHHEVVLEKCRLESEVTKLKEKLC 139 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.022 | 44 | 104 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-18 | 47 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-19 | 47 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-15 | 49 | 105 | No hit | No description |
Pfam | PF00046 | 1.7E-17 | 49 | 103 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 51 | 110 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 75 | 84 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 79 | 102 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 84 | 100 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MNKLEDQMAF ISQIYLGGYP QVAPQQAESK PRRRRNKNKG GENNLSMTKK RKLSQEQVDL 60 LEHHFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEGF SKLKSDHHEV 120 VLEKCRLESE VTKLKEKLCE AKKEIQRLGE RVDRGSSNSP SSSLTMEAMD TPFLGEFGLE 180 GYDNVFYIAE NSYNNIPGME WMNMYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 50 | RRRNKNKGGENNLSMTKKR |
2 | 32 | 51 | RRRNKNKGGENNLSMTKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488188.1 | 1e-153 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 1e-69 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0D2P386 | 1e-152 | A0A0D2P386_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G051100.1 | 1e-152 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-59 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G051100.1 |
Entrez Gene | 105801430 |
Publications ? help Back to Top | |||
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