PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G049700.3
Common NameB456_007G049700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 240aa    MW: 26017.4 Da    PI: 10.1449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G049700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64e-19155189135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Gorai.007G049700.3 155 CSHCGVTKTPQWRAGPMGVKTLCNACGVRFKSGRL 189
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.4E-742235IPR016679Transcription factor, GATA, plant
SMARTSM004011.9E-17149203IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.229149185IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14151212No hitNo description
Gene3DG3DSA:3.30.50.102.5E-15153187IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.72E-13154202No hitNo description
PfamPF003207.2E-17155189IPR000679Zinc finger, GATA-type
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVRKVPFLQA DDVANLEWLS HFVEDSFSEH SAAAYPAGML TEKPNLPDHK LPKPEKPVTT  60
CFKTRVPGKA RSKRSRTGGR VWCLVASPPF TESSSSSSSS SSSSPSASSP WFLCSNSGSD  120
STLELSESLS MEKKHKKRPA TESTIGNGTQ PTRRCSHCGV TKTPQWRAGP MGVKTLCNAC  180
GVRFKSGRLL PEYRPACSPT FSSELHSNHH RKVLEMRRKR EAPGEAEPGS VPTSVPSFG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489125.11e-166PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH578e-70GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0D2SEB81e-173A0A0D2SEB8_GOSRA; GATA transcription factor
STRINGGorai.007G049700.11e-165(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-65GATA transcription factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]