PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G049700.2

Common Name

B456_007G049700, LOC105802183

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 341aa MW: 37467.5 Da PI: 6.3207

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G049700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.9	6.6e-19	256	290	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l Gorai.007G049700.2 256 CSHCGVTKTPQWRAGPMGVKTLCNACGVRFKSGRL 290 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.0E-87	1	336	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	1.9E-17	250	304	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.229	250	286	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.28E-13	252	313	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.2E-15	254	288	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.07E-14	255	303	No hit	No description
Pfam	PF00320	1.2E-16	256	290	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	256	281	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MECVEAALKT SFRKEMALKS SPQALLEDIW VVNNGQNGVS CDDFSVDDLF DFTHEEGFLE 60 QHDEDEEEEE EQVPVSSSHK RQKLSQEHHF SNDTINFDYS SLSTNELAVP ADDVANLEWL 120 SHFVEDSFSE HSAAAYPAGM LTEKPNLPDH KLPKPEKPVT TCFKTRVPGK ARSKRSRTGG 180 RVWCLVASPP FTESSSSSSS SSSSSPSASS PWFLCSNSGS DSTLELSESL SMEKKHKKRP 240 ATESTIGNGT QPTRRCSHCG VTKTPQWRAG PMGVKTLCNA CGVRFKSGRL LPEYRPACSP 300 TFSSELHSNH HRKVLEMRRK REAPGEAEPG SVPTSVPSFG *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489125.1	0.0	PREDICTED: GATA transcription factor 5-like
Swissprot	Q9FH57	1e-87	GATA5_ARATH; GATA transcription factor 5
TrEMBL	A0A0D2S756	0.0	A0A0D2S756_GOSRA; GATA transcription factor
TrEMBL	A0A0D2T955	0.0	A0A0D2T955_GOSRA; GATA transcription factor
STRING	Gorai.007G049700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	4e-79	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Gorai.007G049700.2
Entrez Gene	105802183

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]