PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G049700.1
Common NameB456_007G049700, LOC105802183
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 380aa    MW: 42054.8 Da    PI: 6.5057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G049700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.6e-19295329135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  Gorai.007G049700.1 295 CSHCGVTKTPQWRAGPMGVKTLCNACGVRFKSGRL 329
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-17289343IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.229289325IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-13291352No hitNo description
Gene3DG3DSA:3.30.50.104.9E-15293327IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.99E-14294342No hitNo description
PfamPF003201.4E-16295329IPR000679Zinc finger, GATA-type
PROSITE patternPS003440295320IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDAFYHHSML YQTHHHPFFF KFPPLASTTP LLLSSSLQEM ECVEAALKTS FRKEMALKSS  60
PQALLEDIWV VNNGQNGVSC DDFSVDDLFD FTHEEGFLEQ HDEDEEEEEE QVPVSSSHKR  120
QKLSQEHHFS NDTINFDYSS LSTNELAVPA DDVANLEWLS HFVEDSFSEH SAAAYPAGML  180
TEKPNLPDHK LPKPEKPVTT CFKTRVPGKA RSKRSRTGGR VWCLVASPPF TESSSSSSSS  240
SSSSPSASSP WFLCSNSGSD STLELSESLS MEKKHKKRPA TESTIGNGTQ PTRRCSHCGV  300
TKTPQWRAGP MGVKTLCNAC GVRFKSGRLL PEYRPACSPT FSSELHSNHH RKVLEMRRKR  360
EAPGEAEPGS VPTSVPSFG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489125.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH578e-87GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A0D2S7560.0A0A0D2S756_GOSRA; GATA transcription factor
STRINGGorai.007G049700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-79GATA transcription factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]