PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G046000.1
Common NameB456_007G046000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 236aa    MW: 26493.1 Da    PI: 7.0314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G046000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-19137187255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd   ng  +r++lg++ taeeAa a+++a+ k++g
  Gorai.007G046000.1 137 HYRGVRQRP-WGKFAAEIRDSARNG--ARVWLGTYETAEEAALAYDRAAFKMRG 187
                         7********.**********32244..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-31136196IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23137196IPR016177DNA-binding domain
CDDcd000185.22E-33137196No hitNo description
PROSITE profilePS5103223.63137195IPR001471AP2/ERF domain
SMARTSM003805.8E-39137201IPR001471AP2/ERF domain
PfamPF008478.9E-15137187IPR001471AP2/ERF domain
PRINTSPR003675.0E-11138149IPR001471AP2/ERF domain
PRINTSPR003675.0E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNEISLCEYS FSHQYPRSPS FTCLNSCLTE RWGDLPLKVD DSEDMLIYNS LHEALNFGWS  60
PSDSTLPTAI KDEPEVLTPV IKVNSIGSTQ PVAAATTQML FGTAFMGISS ENETAFFMGK  120
QEKCFRNGNQ RVAKGRHYRG VRQRPWGKFA AEIRDSARNG ARVWLGTYET AEEAALAYDR  180
AAFKMRGSRA LLNFPHRQKS LVTKQTELER DMELTVFQLG HQMGLMPLGE QLLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-36133200168ATERF1
3gcc_A2e-36133200168ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Weakly expressed in roots. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6569570.0JN656957.1 Gossypium hirsutum ERF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695585.11e-172PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_016725838.11e-172PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-64ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A0D2SE391e-177A0A0D2SE39_GOSRA; Uncharacterized protein
STRINGGorai.007G046000.11e-178(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-44ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]