PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G043500.3 | ||||||||
Common Name | B456_007G043500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 375aa MW: 41443.6 Da PI: 8.5488 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 94 | 171 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+ Gorai.007G043500.3 94 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 171 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-32 | 90 | 156 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.684 | 92 | 169 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-37 | 93 | 174 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-30 | 95 | 168 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDWNLKATSG DFTEFVQETV SNADTDIING NESNSYKLLN SIGDFRVDLK LGQVGNSGEL 60 PSNKWKEPRV LKMESSSSSS KKFRPTNIGT HPVVCLVDEC NTDLSNCRDY HRRHKVCELH 120 SKTAEVMING LKQRFCQQCS RFHSLEEFDN GKRSCRARLD RHNRRRRKPQ PDPLSHSRSY 180 FSNYQGSQML PFSGLQVYPS TSVVKTTWPE SRYLNLKQPP AKQNLLLGSS SSNYREGKQQ 240 CSFLQGKNQT PVKASICQPV LGGVAPFSEG NGGCQSMLCD RLTTQVRDSD CALSLLSSPL 300 LHTSGIGLSN MVQPQSFPLV QSLGPSLQDH IIEPMGSVIA NGRETTVHGS GMFHMGSGGS 360 SASEPPENLG FHWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-27 | 94 | 168 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 168 | KRSCRARLDRHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622326 | 0.0 | KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489021.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_012489022.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_012489023.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A0D2P2W6 | 0.0 | A0A0D2P2W6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2SE09 | 0.0 | A0A0D2SE09_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G043500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-56 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G043500.3 |
Publications ? help Back to Top | |||
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