PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G043500.3
Common NameB456_007G043500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 375aa    MW: 41443.6 Da    PI: 8.5488
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G043500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.7e-4094171178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
  Gorai.007G043500.3  94 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 171
                         6**************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3290156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.68492169IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3793174IPR004333Transcription factor, SBP-box
PfamPF031103.2E-3095168IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDWNLKATSG DFTEFVQETV SNADTDIING NESNSYKLLN SIGDFRVDLK LGQVGNSGEL  60
PSNKWKEPRV LKMESSSSSS KKFRPTNIGT HPVVCLVDEC NTDLSNCRDY HRRHKVCELH  120
SKTAEVMING LKQRFCQQCS RFHSLEEFDN GKRSCRARLD RHNRRRRKPQ PDPLSHSRSY  180
FSNYQGSQML PFSGLQVYPS TSVVKTTWPE SRYLNLKQPP AKQNLLLGSS SSNYREGKQQ  240
CSFLQGKNQT PVKASICQPV LGGVAPFSEG NGGCQSMLCD RLTTQVRDSD CALSLLSSPL  300
LHTSGIGLSN MVQPQSFPLV QSLGPSLQDH IIEPMGSVIA NGRETTVHGS GMFHMGSGGS  360
SASEPPENLG FHWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27941681084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151168KRSCRARLDRHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223260.0KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489021.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_012489022.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_012489023.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A0D2P2W60.0A0A0D2P2W6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2SE090.0A0A0D2SE09_GOSRA; Uncharacterized protein
STRINGGorai.007G043500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-56SBP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]