PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G043500.1
Common NameB456_007G043500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 424aa    MW: 47203.5 Da    PI: 8.9716
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G043500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.13.3e-40143220178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v++C++dls++++yhrrhkvCe hsk+++v+++gl+qrfCqqCsrfh+l+efD++krsCr rL++hn+rrrk+q+
  Gorai.007G043500.1 143 VCLVDECNTDLSNCRDYHRRHKVCELHSKTAEVMINGLKQRFCQQCSRFHSLEEFDNGKRSCRARLDRHNRRRRKPQP 220
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-32139205IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.684141218IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-37142223IPR004333Transcription factor, SBP-box
PfamPF031103.9E-30144217IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESLSVIQWL EKRKQLFLFV CNCKSFILGE NSRKKLNKQG VEVKGFFILM DWNLKATSGD  60
FTEFVQETVS NADTDIINGN ESNSYKLLNS IGDFRVDLKL GQVGNSGELP SNKWKEPRVL  120
KMESSSSSSK KFRPTNIGTH PVVCLVDECN TDLSNCRDYH RRHKVCELHS KTAEVMINGL  180
KQRFCQQCSR FHSLEEFDNG KRSCRARLDR HNRRRRKPQP DPLSHSRSYF SNYQGSQMLP  240
FSGLQVYPST SVVKTTWPES RYLNLKQPPA KQNLLLGSSS SNYREGKQQC SFLQGKNQTP  300
VKASICQPVL GGVAPFSEGN GGCQSMLCDR LTTQVRDSDC ALSLLSSPLL HTSGIGLSNM  360
VQPQSFPLVQ SLGPSLQDHI IEPMGSVIAN GRETTVHGSG MFHMGSGGSS ASEPPENLGF  420
HWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271432171084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200217KRSCRARLDRHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223260.0KJ622326.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489021.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_012489022.10.0PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_012489023.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A0D2P2W60.0A0A0D2P2W6_GOSRA; Uncharacterized protein
STRINGGorai.007G043500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-56SBP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]