PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G043400.2
Common NameB456_007G043400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21917.3 Da    PI: 11.0604
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G043400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.4e-291868151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvtfskRrng+lKKA+ELS+LCdaeva++ifss+gk+y ++s
  Gorai.007G043400.2 18 KRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFAS 68
                        79***********************************************86 PP
2K-box676.5e-23941791398
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + e ++ e++ Lk+ i++L+  ++hl Ged+  L +++L+qLe+qL+ +++++Rs+K +++ ++   l+++ k+lqeen +L+k++
  Gorai.007G043400.2  94 TREFWRSEIDELKRSINTLEARLKHLSGEDILALGMRDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRV 179
                         5689*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-411069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1091070IPR002100Transcription factor, MADS-box
CDDcd002655.51E-391179No hitNo description
SuperFamilySSF554551.96E-321185IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-311232IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001266IPR002100Transcription factor, MADS-box
PfamPF003199.3E-271966IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-313247IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-314768IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2194179IPR002487Transcription factor, K-box
PROSITE profilePS5129712.16295186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDDSWVLKEM GRGKVELKRI ENPTNRQVTF SKRRNGLLKK AFELSILCDA EVALLIFSSS  60
GKVYQFASHD MDRTVAKYRR EVGLPDSSNP QFRTREFWRS EIDELKRSIN TLEARLKHLS  120
GEDILALGMR DLKQLERQLK IGVERVRSRK RRIVSDHATL LKRRHKQLQE ENSRLHKRVR  180
LSFCTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-251078169MEF2 CHIMERA
6byy_B3e-251078169MEF2 CHIMERA
6byy_C3e-251078169MEF2 CHIMERA
6byy_D3e-251078169MEF2 CHIMERA
6bz1_A3e-251078169MEF2 CHIMERA
6bz1_B3e-251078169MEF2 CHIMERA
6bz1_C3e-251078169MEF2 CHIMERA
6bz1_D3e-251078169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364520.0HM236452.1 Gossypium hirsutum MADS36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489026.11e-127PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLA0A0D2S6V01e-132A0A0D2S6V0_GOSRA; Uncharacterized protein
STRINGGorai.007G043400.11e-126(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.16e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]