PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G041600.4
Common NameB456_007G041600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 481aa    MW: 52358.6 Da    PI: 4.929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G041600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.5e-12137159426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e+C ++++tG Ck+G++CkF+H+
  Gorai.007G041600.4 137 ENCAYYMKTGLCKFGSNCKFNHP 159
                         89********************9 PP
2zf-CCCH30.56e-10182207227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C++++rtG Ck+G  C+++H++
  Gorai.007G041600.4 182 GQTECKYYLRTGGCKFGKACRYNHSR 207
                         6789********************95 PP
3zf-CCCH39.49.9e-13228252226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.007G041600.4 228 GEKECPYYMRNGSCKYGANCRFNHP 252
                         6789********************9 PP
4zf-CCCH26.89e-09366392127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++Ck++H++
  Gorai.007G041600.4 366 PGQPECSYFLKTGDCKFKSNCKYHHPK 392
                         5789*********************96 PP
5zf-CCCH36.11.1e-11413438227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C++++r+G+Ck+G+ CkF H++
  Gorai.007G041600.4 413 DQSICSHYSRYGICKFGPACKFDHSM 438
                         6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126133161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10137159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5139158IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652180208IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-8182207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5183208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4186207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004226254IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6226253IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10228252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6228254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5232251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333365393IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4365392IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6367392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5369395IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6409437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305411439IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4411438IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9413437IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4415438IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSQSEEAPIS DTTALADSAL NTLGHLSPDS DPTPNPDASP TPSDLNRAAE GTGHDESNLE  60
QQLQDLDLKE EVAAAVAAAE TKDDGERKGD NDYNEADAGA AEEKEDEEEK NENENDGENG  120
KRFEGVRSHF PVRPDAENCA YYMKTGLCKF GSNCKFNHPV RRKNQGDQEN LKENDESTEK  180
PGQTECKYYL RTGGCKFGKA CRYNHSRAKS STDPILELNF LGLPIRQGEK ECPYYMRNGS  240
CKYGANCRFN HPDPTTTGAC DPPAAYGNGG SVSSQAASQV NIASWSSPRA LNETATATFM  300
PIMFSPTPGV PPPNPEWNGY QATIYPPPER ILHPTPAYVM SSPSTETTVY TQNQPQMVVD  360
EFPVRPGQPE CSYFLKTGDC KFKSNCKYHH PKNRLAKPAP CALSDKGLPL RPDQSICSHY  420
SRYGICKFGP ACKFDHSMQA APSTTVSELE QPPPFSHSAP LEQTGIAGSN GTDTAVQQHV  480
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489000.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-138C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2SDZ10.0A0A0D2SDZ1_GOSRA; Uncharacterized protein
STRINGGorai.007G041600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-137C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]