PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G041600.3

Common Name

B456_007G041600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 451aa MW: 49499.8 Da PI: 5.0417

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G041600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39	1.4e-12	166	188	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C ++++tG Ck+G++CkF+H+ Gorai.007G041600.3 166 ENCAYYMKTGLCKFGSNCKFNHP 188 89********************9 PP
2	zf-CCCH	30.6	5.6e-10	211	236	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++rtG Ck+G C+++H++ Gorai.007G041600.3 211 GQTECKYYLRTGGCKFGKACRYNHSR 236 6789********************95 PP
3	zf-CCCH	39.5	9.2e-13	257	281	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gorai.007G041600.3 257 GEKECPYYMRNGSCKYGANCRFNHP 281 6789********************9 PP
4	zf-CCCH	26.9	8.3e-09	395	421	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Gorai.007G041600.3 395 PGQPECSYFLKTGDCKFKSNCKYHHPK 421 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.126	162	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-5	162	189	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-6	163	190	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.0E-10	166	188	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-5	168	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	209	237	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-5	209	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.8E-8	211	236	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.09E-5	212	237	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	215	236	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.004	255	283	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-6	255	282	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	257	281	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	257	283	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	261	280	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	394	421	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	394	422	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-6	396	421	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	398	424	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MGWLNMSWKP WLRFGSSFQA FLVLKCGFTM SQSEEAPISD TTALADSALN TLGHLSPDSD 60 PTPNPDASPT PSDLNRAAEG TGHDESNLEQ QLQDLDLKEE VAAAVAAAET KDDGERKGDN 120 DYNEADAGAA EEKEDEEEKN ENENDGENGK RFEGVRSHFP VRPDAENCAY YMKTGLCKFG 180 SNCKFNHPVR RKNQGDQENL KENDESTEKP GQTECKYYLR TGGCKFGKAC RYNHSRAKSS 240 TDPILELNFL GLPIRQGEKE CPYYMRNGSC KYGANCRFNH PDPTTTGACD PPAAYGNGGS 300 VSSQAASQVN IASWSSPRAL NETATATFMP IMFSPTPGVP PPNPEWNGYQ ATIYPPPERI 360 LHPTPAYVMS SPSTETTVYT QNQPQMVVDE FPVRPGQPEC SYFLKTGDCK FKSNCKYHHP 420 KNRLAKPAPC ALSDKGLPLR PVSSSFNNCI *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MGWLNMSWKP WLRFGSSFQA FLVLKCGFTM SQSEEAPISD TTALADSALN TLGHLSPDSD  60
PTPNPDASPT PSDLNRAAEG TGHDESNLEQ QLQDLDLKEE VAAAVAAAET KDDGERKGDN  120
DYNEADAGAA EEKEDEEEKN ENENDGENGK RFEGVRSHFP VRPDAENCAY YMKTGLCKFG  180
SNCKFNHPVR RKNQGDQENL KENDESTEKP GQTECKYYLR TGGCKFGKAC RYNHSRAKSS  240
TDPILELNFL GLPIRQGEKE CPYYMRNGSC KYGANCRFNH PDPTTTGACD PPAAYGNGGS  300
VSSQAASQVN IASWSSPRAL NETATATFMP IMFSPTPGVP PPNPEWNGYQ ATIYPPPERI  360
LHPTPAYVMS SPSTETTVYT QNQPQMVVDE FPVRPGQPEC SYFLKTGDCK FKSNCKYHHP  420
KNRLAKPAPC ALSDKGLPLR PVSSSFNNCI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489000.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like
Swissprot	Q9STM4	1e-115	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0D2P2R7	0.0	A0A0D2P2R7_GOSRA; Uncharacterized protein
STRING	Gorai.007G041600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-115	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G041600.3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]