PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G041600.1
Common NameB456_007G041600, LOC105802094
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 510aa    MW: 55779.6 Da    PI: 5.1556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G041600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.6e-12166188426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e+C ++++tG Ck+G++CkF+H+
  Gorai.007G041600.1 166 ENCAYYMKTGLCKFGSNCKFNHP 188
                         89********************9 PP
2zf-CCCH30.46.5e-10211236227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C++++rtG Ck+G  C+++H++
  Gorai.007G041600.1 211 GQTECKYYLRTGGCKFGKACRYNHSR 236
                         6789********************95 PP
3zf-CCCH39.31.1e-12257281226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G CkyG++C+F+H+
  Gorai.007G041600.1 257 GEKECPYYMRNGSCKYGANCRFNHP 281
                         6789********************9 PP
4zf-CCCH26.79.6e-09395421127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Ck+ ++Ck++H++
  Gorai.007G041600.1 395 PGQPECSYFLKTGDCKFKSNCKYHHPK 421
                         5789*********************96 PP
5zf-CCCH361.1e-11442467227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C++++r+G+Ck+G+ CkF H++
  Gorai.007G041600.1 442 DQSICSHYSRYGICKFGPACKFDHSM 467
                         6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126162190IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6163190IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10166188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5168187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652209237IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5209236IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5212237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4215236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004255283IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6255282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6257283IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10257281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5261280IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4394421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333394422IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6396421IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5398424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6438466IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4440467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305440468IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9442466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4444467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MGWLNMSWKP WLRFGSSFQA FLVLKCGFTM SQSEEAPISD TTALADSALN TLGHLSPDSD  60
PTPNPDASPT PSDLNRAAEG TGHDESNLEQ QLQDLDLKEE VAAAVAAAET KDDGERKGDN  120
DYNEADAGAA EEKEDEEEKN ENENDGENGK RFEGVRSHFP VRPDAENCAY YMKTGLCKFG  180
SNCKFNHPVR RKNQGDQENL KENDESTEKP GQTECKYYLR TGGCKFGKAC RYNHSRAKSS  240
TDPILELNFL GLPIRQGEKE CPYYMRNGSC KYGANCRFNH PDPTTTGACD PPAAYGNGGS  300
VSSQAASQVN IASWSSPRAL NETATATFMP IMFSPTPGVP PPNPEWNGYQ ATIYPPPERI  360
LHPTPAYVMS SPSTETTVYT QNQPQMVVDE FPVRPGQPEC SYFLKTGDCK FKSNCKYHHP  420
KNRLAKPAPC ALSDKGLPLR PDQSICSHYS RYGICKFGPA CKFDHSMQAA PSTTVSELEQ  480
PPPFSHSAPL EQTGIAGSNG TDTAVQQHV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489000.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-136C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0D2S6S30.0A0A0D2S6S3_GOSRA; Uncharacterized protein
STRINGGorai.007G041600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]