PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G040400.1

Common Name

B456_007G0404002

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 299aa MW: 32459.7 Da PI: 7.073

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G040400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k+s+ Gorai.007G040400.1 30 HHQALKCPRCDSSNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 90 57899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	30	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.497	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQDIHLIEGG RLFNGGGDDG GGGDRKLRAH HQALKCPRCD SSNTKFCYYN NYNLSQPRYF 60 CKNCRRYWTK GGVLRNVPVG GGCRKAKRSK TKPSSETTVS ATVVSALPHP EQQQRQHQNS 120 DQRKADSHSS TESSSLNAAN CKVAVTNNNN NNSNSKNNSS LVGTTEAASA ITSRSTFYGN 180 PNNLGLEPGL LEQGSDGGIF AEIGSLTNLI TSPNNETLSF DFGTVLNRPG QWQPQQMTMS 240 MGGEEITKGL LDQTVQIEQS NLNIKLDSGF QPLDWEGSED QGLFGLPSTV DQTYWSVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRLFNGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393237	2e-68	GQ393237.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0202 SSR marker CGR5097 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695642.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A0D2T5G5	0.0	A0A0D2T5G5_GOSRA; Uncharacterized protein
STRING	Gorai.007G040400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-40	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Gorai.007G040400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]