PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G037100.1
Common NameB456_007G037100, LOC105802047
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 291aa    MW: 32681.7 Da    PI: 8.2752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G037100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Gorai.007G037100.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding53.17.2e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T+eE++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Gorai.007G037100.1  67 RGNFTEEEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.328961IPR017930Myb domain
SuperFamilySSF466896.11E-3111108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241568IPR009057Homeodomain-like
CDDcd001672.24E-111661No hitNo description
PROSITE profilePS5129425.47462116IPR017930Myb domain
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2569117IPR009057Homeodomain-like
CDDcd001677.05E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEEEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKGQ  120
NQDGVSYCQS VPKGQWERRL QTDIRMAKQA LTEALSLRKQ NPSTGLNDFN DLLNSAQPHQ  180
PPTYASSADN ISRLLQNWMK NTPKPASATA TTNSAETMTR SSFNSNDEGA LSDKGLDSFF  240
SFNSCSTCSD NDVSHESENS VVFQVESKPN MGDQIPLTLI EKWLLDDVLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488913.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-122MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D2T8E90.0A0A0D2T8E9_GOSRA; Uncharacterized protein
STRINGGorai.007G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-103myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]