PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G034800.1 | ||||||||
Common Name | B456_007G034800, LOC105801416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 298aa MW: 33436.3 Da PI: 6.3823 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.3e-39 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+lk+l+++++ +am+s+ y+A++r + PvyG++gvi++l q++ l+ Gorai.007G034800.1 10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILKSLDPSQHAEAMRSIKYQANVRDKFPVYGCLGVIRQLYYQIQLLE 100 7****************************************************************************************** PP DUF260 92 aelallke 99 +e +++ + Gorai.007G034800.1 101 EEFHSVLS 108 *9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.161 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-37 | 10 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTLKSGTTSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILKSLDP 60 SQHAEAMRSI KYQANVRDKF PVYGCLGVIR QLYYQIQLLE EEFHSVLSQL EVYRQHHHEV 120 PSQLELGMAP PTNGLHFLTA VSDMPVSMQH SYSNSNNIGY CSSYVDSKDH NNNKNNSNSS 180 SNSNSNNNSL WIQHPFLATN NSSSSNSNEN NPLMAIQSQL LVSNTQPLVI QHEVVQDYDE 240 LHPFFDTIDD RQFFIHSKEP YDSSCEDSAK ETTQAIELVP NNELKNAAAC FSLTSVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-30 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614899 | 0.0 | JX614899.1 Gossypium hirsutum clone NBRI_GE58613 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488173.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 9e-60 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A0D2S693 | 0.0 | A0A0D2S693_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G034800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 7e-55 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G034800.1 |
Entrez Gene | 105801416 |
Publications ? help Back to Top | |||
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