PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G032800.1 | ||||||||
Common Name | B456_007G032800, LOC105802003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 337aa MW: 37010.9 Da PI: 7.451 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.6 | 2.1e-08 | 77 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f + GtC+y ++C+FaH+ Gorai.007G032800.1 77 FKTKLCCKFKA-GTCPYISNCNFAHS 101 69*********.*************8 PP | |||||||
2 | zf-CCCH | 41.9 | 1.7e-13 | 219 | 244 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Gorai.007G032800.1 219 WKTRICNKWELTGYCPFGNKCHFAHG 244 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.1E-8 | 74 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-14 | 74 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 76 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 76 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-6 | 77 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-9 | 148 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 149 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.022 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-17 | 214 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-10 | 215 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.225 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-11 | 219 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MDYSRENVVH VIPTNDNWVP NSSDPSVWAT EEDYRVWNNQ ETSADTLLSN SDQPPNKKPR 60 NSQDLNTRSR AIGKMFFKTK LCCKFKAGTC PYISNCNFAH STEELRRPPP NWQEIVAAHE 120 EEKGILSEPR EEFQIPSLGS TSFSGETQRS YKGRHCKKFY SEEGCPYGDN CTFLHDEQSK 180 NRESVAISLG PGGYGGGGAG GGGSGGGGGN GSNAKPSNWK TRICNKWELT GYCPFGNKCH 240 FAHGAAELHR YRGGLGDAEI KDTNATLSDS KQGGAMPLRT PSDSVVASVP QLPVSDVYHS 300 QRTSIVLQRP GQRTLQKWKG PDKISLIYGD WIDDIQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.3567 | 0.0 | flower|seedling| flowering |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX590702 | 1e-123 | JX590702.1 Gossypium hirsutum clone NBRI_GE25674 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488854.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-122 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A0D2P292 | 0.0 | A0A0D2P292_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G032800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-125 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G032800.1 |
Entrez Gene | 105802003 |
Publications ? help Back to Top | |||
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