PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G032800.1
Common NameB456_007G032800, LOC105802003
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 337aa    MW: 37010.9 Da    PI: 7.451
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G032800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-0877101126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f + GtC+y ++C+FaH+
  Gorai.007G032800.1  77 FKTKLCCKFKA-GTCPYISNCNFAHS 101
                         69*********.*************8 PP
2zf-CCCH41.91.7e-13219244126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  Gorai.007G032800.1 219 WKTRICNKWELTGYCPFGNKCHFAHG 244
                         8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.1E-874107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-1474109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3176103IPR000571Zinc finger, CCCH-type
SMARTSM003560.002576102IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-677101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-9148178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7149178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277150178IPR000571Zinc finger, CCCH-type
SMARTSM003560.022150177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-17214248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-10215249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225218246IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9218245IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-11219244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDYSRENVVH VIPTNDNWVP NSSDPSVWAT EEDYRVWNNQ ETSADTLLSN SDQPPNKKPR  60
NSQDLNTRSR AIGKMFFKTK LCCKFKAGTC PYISNCNFAH STEELRRPPP NWQEIVAAHE  120
EEKGILSEPR EEFQIPSLGS TSFSGETQRS YKGRHCKKFY SEEGCPYGDN CTFLHDEQSK  180
NRESVAISLG PGGYGGGGAG GGGSGGGGGN GSNAKPSNWK TRICNKWELT GYCPFGNKCH  240
FAHGAAELHR YRGGLGDAEI KDTNATLSDS KQGGAMPLRT PSDSVVASVP QLPVSDVYHS  300
QRTSIVLQRP GQRTLQKWKG PDKISLIYGD WIDDIQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.35670.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5907021e-123JX590702.1 Gossypium hirsutum clone NBRI_GE25674 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488854.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-122C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D2P2920.0A0A0D2P292_GOSRA; Uncharacterized protein
STRINGGorai.007G032800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-125C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]