PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G029200.1
Common NameB456_007G029200, LOC105801968
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 291aa    MW: 32609.5 Da    PI: 7.5298
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G029200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-19126180256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Lee+F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Gorai.007G029200.1 126 RKKLRLSKDQSAILEECFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 180
                         788899***********************************************98 PP
2HD-ZIP_I/II129.51.3e-41126215191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Gorai.007G029200.1 126 RKKLRLSKDQSAILEECFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 215
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.4E-27298IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.3E-18113176IPR009057Homeodomain-like
SuperFamilySSF466893.51E-19113183IPR009057Homeodomain-like
PROSITE profilePS5007117.119122182IPR001356Homeobox domain
SMARTSM003891.1E-16124186IPR001356Homeobox domain
CDDcd000861.92E-15126183No hitNo description
PfamPF000467.8E-17126180IPR001356Homeobox domain
PRINTSPR000311.9E-5153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5162178IPR000047Helix-turn-helix motif
SMARTSM003404.2E-27182225IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-11182216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMVGKDQDLG LSLSLSSSQN HHLLQLNLSP SLVPSSANQC YSPSDPNTES LRAETRSFLK  60
GIDVNRLPST VDCEEEAGVS SPNSTISSSL SGKRSEREGN NNGDELEIER ASSHGISDEE  120
DGDTSRKKLR LSKDQSAILE ECFKEHNTLN PKQKLALAKQ LGLRPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMQMNPPTT LTMCPSCERV  240
GVPQNASSAV DPRSHHQLVQ SHQQRHITIN PWAPSAPIPH RPFDALHPRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SRKKLRL
2174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8484810.0GQ848481.1 Gossypium arboreum cultivar FDH-171 homeodomain associated leucine zipper protein (HDZip) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488795.10.0PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-113HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A0D2S5V10.0A0A0D2S5V1_GOSRA; Uncharacterized protein
TrEMBLA0A2P5Q5920.0A0A2P5Q592_GOSBA; Uncharacterized protein
STRINGGorai.007G029200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-96homeobox protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]