PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G026200.1
Common NameB456_007G026200, LOC105801937
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 297aa    MW: 32971.4 Da    PI: 9.3239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G026200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20111159355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p +   rkr++lg++ tae Aa a+++a+ kl+g
  Gorai.007G026200.1 111 YRGVRQRR-WGKWVAEIRLPQN---RKRVWLGTYETAETAALAYDRAAYKLRG 159
                         9****998.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-36110173IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23110167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-31110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.288110167IPR001471AP2/ERF domain
PfamPF008474.5E-14111159IPR001471AP2/ERF domain
PRINTSPR003671.8E-10111122IPR001471AP2/ERF domain
CDDcd000181.37E-31111169No hitNo description
PRINTSPR003671.8E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQKTDHVCGF NDGANIGSSL SQLILSGGSN TIDSIFSRCA PSSTMAGVYE PLGSSVYHRQ  60
RDLLEKFSHE KKENASFSFK CLTNPIQNSQ NHASTTAAAK YLSSPQKKNL YRGVRQRRWG  120
KWVAEIRLPQ NRKRVWLGTY ETAETAALAY DRAAYKLRGD YARLNFPNLK DPSKFGFVDC  180
AQLNALKNMV DAKIQAICQK MKTERTKKKA KKGNFDRPGC SSSSSLSPMV FSDDLSKELI  240
SPTVSGDGFL RAENSSSSVS NDYPMMVVAE ELPFEDELLA RMPSFDAELL WDCLAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21111167360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488751.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-57ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2SCX00.0A0A0D2SCX0_GOSRA; Uncharacterized protein
STRINGGorai.007G026200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.17e-43ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]