PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G016800.1 | ||||||||
Common Name | B456_007G016800, LOC105801847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25547.3 Da PI: 5.6474 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.5e-19 | 36 | 89 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ft++q++ Le+ Fe++ ++ +++ + A++lgL+ rqV++WFqNrRa+ k Gorai.007G016800.1 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLK 89 5679************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.8e-37 | 36 | 124 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e++ L ++ Gorai.007G016800.1 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEKQCLISQ 124 79**********************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.3E-18 | 19 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-17 | 34 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-16 | 36 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.36E-14 | 37 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 37 | 97 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.6E-5 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.9E-12 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP 60 KKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC 120 LISQKEKLSE MLAESETTGV NNKVSKEGST EHEAEPGSSF KQEDDGVLGL ETEKGHREIE 180 DAVKHGDELM SMDEYRDYDD QFDHLCSRWQ HWLNFWT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRARLKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584309 | 1e-151 | JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488622.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A0D2QJS0 | 1e-160 | A0A0D2QJS0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G016800.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17513 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-40 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G016800.1 |
Entrez Gene | 105801847 |
Publications ? help Back to Top | |||
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