PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G014600.1
Common NameB456_007G014600, LOC105801821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 333aa    MW: 36583.4 Da    PI: 6.1687
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G014600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29132193159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg++WrKYGqK++ gs+fpr+YYrCt++   gC ++k+v+rs++dp++++itY g+H+++
  Gorai.007G014600.1 132 LDDGFSWRKYGQKDILGSRFPRGYYRCTHRninGCLATKQVQRSDDDPTIFDITYVGTHTCR 193
                         59***************************99999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.366127190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28127194IPR003657WRKY domain
SuperFamilySSF1182905.1E-26131193IPR003657WRKY domain
SMARTSM007741.7E-39132194IPR003657WRKY domain
PfamPF031062.0E-27133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEKMGEWEQR SLVSELTQGR EVARQLQAHL NGASSSSYDI ETREVLVQKI EASYEKALSI  60
LNCNVNTSSA SAVVPLTPVI RMPESPNSRC GSPPSEDSDR SFRVSDASKK RKAPRWTQEV  120
RVTPGTALEG PLDDGFSWRK YGQKDILGSR FPRGYYRCTH RNINGCLATK QVQRSDDDPT  180
IFDITYVGTH TCRNVTSHLM SEKNQEQGPS ASSMAAVEPQ SSSSSQDLLL NFQKGLKVKT  240
QDLEDQTYAS LIPYTSSTSN VVFSWPSVID NNRNFVSPAT SGTDFGFGTC DDQIIQASAA  300
ASVTSSPTVG LDHFHQLDGN FTFDNNGFFR HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-211321901474Disease resistance protein RRS1
5w3x_D6e-211321901474Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697790.0KF669779.1 Gossypium hirsutum WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488574.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0D2SCD40.0A0A0D2SCD4_GOSRA; Uncharacterized protein
STRINGGorai.007G014600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-57WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]