PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G014600.1 | ||||||||
Common Name | B456_007G014600, LOC105801821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 333aa MW: 36583.4 Da PI: 6.1687 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.7e-29 | 132 | 193 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ gs+fpr+YYrCt++ gC ++k+v+rs++dp++++itY g+H+++ Gorai.007G014600.1 132 LDDGFSWRKYGQKDILGSRFPRGYYRCTHRninGCLATKQVQRSDDDPTIFDITYVGTHTCR 193 59***************************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.366 | 127 | 190 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-28 | 127 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-26 | 131 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-39 | 132 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-27 | 133 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEKMGEWEQR SLVSELTQGR EVARQLQAHL NGASSSSYDI ETREVLVQKI EASYEKALSI 60 LNCNVNTSSA SAVVPLTPVI RMPESPNSRC GSPPSEDSDR SFRVSDASKK RKAPRWTQEV 120 RVTPGTALEG PLDDGFSWRK YGQKDILGSR FPRGYYRCTH RNINGCLATK QVQRSDDDPT 180 IFDITYVGTH TCRNVTSHLM SEKNQEQGPS ASSMAAVEPQ SSSSSQDLLL NFQKGLKVKT 240 QDLEDQTYAS LIPYTSSTSN VVFSWPSVID NNRNFVSPAT SGTDFGFGTC DDQIIQASAA 300 ASVTSSPTVG LDHFHQLDGN FTFDNNGFFR HG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 132 | 190 | 14 | 74 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 132 | 190 | 14 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669779 | 0.0 | KF669779.1 Gossypium hirsutum WRKY transcription factor 56 (WRKY56) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488574.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0D2SCD4 | 0.0 | A0A0D2SCD4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G014600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 7e-57 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G014600.1 |
Entrez Gene | 105801821 |
Publications ? help Back to Top | |||
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