PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G012300.1 | ||||||||
Common Name | B456_007G012300, LOC105801798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 626aa MW: 67522 Da PI: 6.3916 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 360.9 | 1.8e-110 | 257 | 625 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 ++++l++A a+s+g++ ++++L+rl + a+++g++ qRl +++ AL++r+++ + + p+ e s+e++a+++l++++sP++k Gorai.007G012300.1 257 KQTILDAAAAISEGKNDVVNEILTRLAQAANSKGSSEQRLMECMLSALKSRVNS----VENPPPVAEL---FSKEHAASTQLLYDLSPCFK 340 57899************************************************9....4443344333...499***************** PP GRAS 93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 +++l+aNqaIl+a+ + ++ H++Dfd + G+Q+++Ll+aL++R +g+p +++iT++++ +g e+l+++g+rL++fAe+ gv+++fn Gorai.007G012300.1 341 LGFLAANQAILDATLDKpscNKFHVVDFDFGLGGQYMNLLHALSERGNGKPaTVKITAIAD--NGGDERLKTVGDRLSQFAESYGVSLKFN 429 *************9988778999***********************977666*********..77************************** PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 v+ +l+dl+ ++L ++++E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F+ r+ ea+ yy alfds Gorai.007G012300.1 430 VISGLKLSDLSRDSLGIEQDEPLAVNFAFKLYRMPDESVSIENPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFASRVGEACGYYGALFDS 520 *9888************************************************************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslv 359 +e+++ r++ +r+k+E+ l r+i n vaceg++r+er+e ++kWr+r+++aGF+ pls+++a+++++ l+ + + g++v+ee+g + Gorai.007G012300.1 521 VESTVLRDNPDRAKLEEG-LLRKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQTVAETMRAKLNSGNrvNPGFTVKEENGGVN 610 ******************.889***********************************************9998777789************ PP GRAS 360 lgWkdrpLvsvSaWr 374 +gW +r+L+++SaWr Gorai.007G012300.1 611 FGWLGRTLTVASAWR 625 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.163 | 230 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-108 | 257 | 625 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MASGFSGGGP DFYGGLAGRS VVNTGTINNN QTTAPYRTQV PGMFMDTSSQ IVNRATPGFI 60 GKRTLADFQT QQALNNNPGR LFLRSVKPRT YQHTSPISPL SPIDLPSNLS PDVMSNFSSP 120 SSCMSQRYGL PLLQQLRPQQ VPLGINTGAT IQAVSTGLSG GPYMNQVSTR VVQPHDPEKK 180 MMNQLQDLEK QLLDDDNDEG DAVSVITNIN SEWSETIQNL IGSTGSPNNP IAPSPTSTTS 240 SCSSTSSTAS PASPCSKQTI LDAAAAISEG KNDVVNEILT RLAQAANSKG SSEQRLMECM 300 LSALKSRVNS VENPPPVAEL FSKEHAASTQ LLYDLSPCFK LGFLAANQAI LDATLDKPSC 360 NKFHVVDFDF GLGGQYMNLL HALSERGNGK PATVKITAIA DNGGDERLKT VGDRLSQFAE 420 SYGVSLKFNV ISGLKLSDLS RDSLGIEQDE PLAVNFAFKL YRMPDESVSI ENPRDELLRR 480 VKGLAPRVVT LVEQEMNTNT APFASRVGEA CGYYGALFDS VESTVLRDNP DRAKLEEGLL 540 RKIANSVACE GRDRVERCEV FGKWRARMSM AGFELKPLSQ TVAETMRAKL NSGNRVNPGF 600 TVKEENGGVN FGWLGRTLTV ASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-41 | 255 | 625 | 11 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488542.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 0.0 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A0D2QJG3 | 0.0 | A0A0D2QJG3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G012300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4350 | 28 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-178 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G012300.1 |
Entrez Gene | 105801798 |
Publications ? help Back to Top | |||
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