PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G011100.1
Common NameB456_007G011100, LOC105801413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 282aa    MW: 32034.6 Da    PI: 6.589
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G011100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l ++v ++G g+W+++a   g+ R +k+c++rw +yl
  Gorai.007G011100.1 16 KGLWSPEEDLKLRNYVLKHGHGCWTSVAINAGLQRNGKSCRLRWINYL 63
                        678*******************************************97 PP

2Myb_DNA-binding49.87.7e-1669114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++++E++ ++ ++++lG++ W+ Ia+ ++ gRt++++k++w+++l
  Gorai.007G011100.1  69 RGMFSPQEEDTILTLHHLLGNR-WSQIAQNLP-GRTDNEIKNYWHSHL 114
                         788*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1321167IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-221266IPR009057Homeodomain-like
SuperFamilySSF466894.4E-2914110IPR009057Homeodomain-like
SMARTSM007173.5E-121565IPR001005SANT/Myb domain
PfamPF002495.9E-151663IPR001005SANT/Myb domain
CDDcd001679.81E-111963No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2567118IPR009057Homeodomain-like
SMARTSM007171.8E-1468116IPR001005SANT/Myb domain
PROSITE profilePS5129419.91568118IPR017930Myb domain
PfamPF002494.9E-1569114IPR001005SANT/Myb domain
CDDcd001674.29E-1172114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGSKSSDQKP RAKHRKGLWS PEEDLKLRNY VLKHGHGCWT SVAINAGLQR NGKSCRLRWI  60
NYLRPGLKRG MFSPQEEDTI LTLHHLLGNR WSQIAQNLPG RTDNEIKNYW HSHLKKRVAK  120
AEELEPQTRT PYTTSSSENT DSALSPRNFA DMRIPSFESF HHIEKPSIST DQTVARQLNI  180
SNEPHGSLMP RLLFAEWLSI DQEGESVANS ASLNGFNHGS SSNFQDPFLS AYLGSFDNDF  240
QDGLSYALVN DEMFSSEFKF ETQISEEEFL GNEINNNVLY I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23161187108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488169.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A0D2S4Y60.0A0A0D2S4Y6_GOSRA; Uncharacterized protein
STRINGGorai.007G011100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-64myb domain protein 18
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]